Browse Element(s) Details


Os.42960.1.S1_x_at

Description gb:NM_189454.1
DB_XREF= gi:34905991
GEN=P0518C01.7
TID=Os.42960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0518C01.7 (P0518C01.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0518C01.7 (P0518C01.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7396010/11Drought induced 19 protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73890OsAffx.24035.1.S1_s_at10/111+43145881..43147971Transcription initiation factor IIA gamma chain, putative, expressed
LOC_Os01g73900OsAffx.20285.3.S1_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_x_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_at10/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73910Os.12771.1.S1_at11/111+43152956..43155684expressed protein
LOC_Os01g73920NANA1+43156951..43157768hypothetical protein
LOC_Os01g73930NANA1+43158189..43163669transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g73950Os.8261.1.S1_at11/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73950Os.8261.2.S1_at10/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73940Os.12303.1.S1_at11/111+43165822..43166397expressed protein
LOC_Os01g73960Os.11921.1.S1_at11/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_x_at10/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_at6/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960OsAffx.19599.1.S1_x_at1/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73970Os.10616.2.S1_x_at11/111+43175076..43179858expressed protein
LOC_Os01g73970Os.10616.1.S1_a_at11/111+43175076..43179858expressed protein
LOC_Os01g73980Os.9015.1.S1_at11/111+43182505..43184314Caricain precursor, putative, expressed
LOC_Os01g73990Os.45964.1.S1_at11/111+43185629..43187346Cytochrome b5, putative, expressed
LOC_Os01g74000Os.24891.2.S1_x_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.2.S1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.1.A1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74010Os.14644.1.S1_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74010Os.14644.1.S1_a_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009785biological_processblue light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42960.1.S1_x_at--840--31Chr01:43173472..43173496 (25 bp)
ATTGTGGGAGTACTTTCCATGCCCT
LOC_Os01g73960
Os.42960.1.S1_x_at--169--611Chr01:43173490..43173514 (25 bp)
ATGCCCTTTCTGTTACATCGAGGTT
LOC_Os01g73960
Os.42960.1.S1_x_at--457--2091Chr01:43173504..43173528 (25 bp)
ACATCGAGGTTGAGGTGCCCTTCAT
LOC_Os01g73960
Os.42960.1.S1_x_at--973--5631NONE
GACACCAGAAATGCTTCGATGTTCA
NONE
Os.42960.1.S1_x_at--798--3491Chr01:43174130..43174154 (25 bp)
CATGGAATTCAGGTGTGCCCGTTGT
LOC_Os01g73960
Os.42960.1.S1_x_at--544--811Chr01:43174178..43174202 (25 bp)
ATGGGTGCCCATTTCAGAGTTCAAC
LOC_Os01g73960
Os.42960.1.S1_x_at--2--7571Chr01:43174390..43174414 (25 bp)
GGGCCTCCACAGTATATGATGAACA
LOC_Os01g73960
Os.42960.1.S1_x_at--699--4791Chr01:43174449..43174473 (25 bp)
GCTCTCCCAATTTATCTGCAGCATG
LOC_Os01g73960
Os.42960.1.S1_x_at--769--8311Chr01:43174473..43174497 (25 bp)
GGCTCAAACTGACACTAACTCGGAT
LOC_Os01g73960
Os.42960.1.S1_x_at--116--5031Chr01:43174516..43174540 (25 bp)
GCAGTTTCAGCAGTCTCACATGATC
LOC_Os01g73960
Os.42960.1.S1_x_at--314--4671Chr01:43174655..43174679 (25 bp)
GCGTGTGACTCTGACTGATGATGCA
LOC_Os01g73960
Target Sequence 
ATTGTGGGAGTACTTTCCATGCCCTTTCTGTTACATCGAGGTTGAGGTGCCCTTCATCTGCAACCATCTTCAGGAAGAGC
ATTGCTTTGACACCAGAAATGCTTCGATGTTCATGGAATTCAGGTGTGCCCGTTGTGCGCCGACAATATAGGGAGAGACA
TGGGTGCCCATTTCAGAGTTCAACACTCACATCTTCTCAAGACCCCTACTTTGAGGGGCCTCCACAGTATATGATGAACA
ACAGGACATACCAAGATCCTGCACCTGATCCACTGCTCTCCCAATTTATCTGCAGCATGGCTCAAACTGACACTAACTCG
GATAACACAAACACTGAAATTGCAGTTTCAGCAGTCTCACATGATCAGAGGTTGAGTCAGCGTGTGACTCTGACTGATGA
TGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42960.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis