Browse Element(s) Details


Os.4320.1.S1_at

Description gb:AK064718.1
DB_XREF= gi:32974736
TID=Os.4320.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-E07, full insert sequence.
FL= gb:AK064718.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0363011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03610Os.14984.1.S1_a_at11/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed
LOC_Os03g03610Os.54124.1.S1_at1/113+1560521..15741791,3-beta-glucan synthase component family protein, expressed
LOC_Os03g03620OsAffx.13603.1.S1_at11/113+1577054..1580404glycosyl transferase family 48 protein, putative, expressed
LOC_Os03g03630Os.4320.1.S1_at11/113+1586374..1587346expressed protein
LOC_Os03g03640Os.4321.1.S1_at11/113+1588134..1590083expressed protein
LOC_Os03g03650Os.4685.1.S1_at11/113+1590668..1594786DNA polymerase delta small subunit, putative, expressed
LOC_Os03g03660Os.2691.1.S1_a_at11/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03660Os.54519.1.S1_at1/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03670Os.4324.1.S1_at11/113+1608507..1610088expressed protein
LOC_Os03g03680OsAffx.30403.1.S1_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03680OsAffx.30403.1.S1_s_at11/113+1610499..1616535major facilitator superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4320.1.S1_at--152--2651Chr03:1586728..1586752 (25 bp)
AACCACGTGCTGCTCATCAGCGACA
LOC_Os03g03630
Os.4320.1.S1_at--768--391Chr03:1586713..1586737 (25 bp)
ATCAGCGACATGGTCTGAGCTCTGA
LOC_Os03g03630
Os.4320.1.S1_at--106--1971Chr03:1586645..1586669 (25 bp)
ACTGATTCTTCTCTCGTCATCGAGC
LOC_Os03g03630
Os.4320.1.S1_at--1011--3792Chr03:1586619..1586643 (25 bp)
CTCCTGCTCGGGTTGGTTAATTGGT
LOC_Os03g03630
Os.4320.1.S1_at--595--5731Chr03:1586570..1586594 (25 bp)
GACTGATCGATTCTACAGTTTAGCT
LOC_Os03g03630
Os.4320.1.S1_at--26--1351Chr03:1586489..1586513 (25 bp)
AGAGTAGGTTCTTTGACTCCTGCCT
LOC_Os03g03630
Os.4320.1.S1_at--812--1991Chr03:1586474..1586498 (25 bp)
ACTCCTGCCTCTGTGTTTGCTTTTA
LOC_Os03g03630
Os.4320.1.S1_at--152--10231Chr03:1586459..1586483 (25 bp)
TTTGCTTTTATTCACTCGTTGTTTC
LOC_Os03g03630
Os.4320.1.S1_at--1046--3771Chr03:1586445..1586469 (25 bp)
CTCGTTGTTTCTTTATACTCGGTTG
LOC_Os03g03630
Os.4320.1.S1_at--582--9911Chr03:1586430..1586454 (25 bp)
TACTCGGTTGAATCATCGTCTCGGC
LOC_Os03g03630
Os.4320.1.S1_at--187--9471Chr03:1586412..1586436 (25 bp)
TCTCGGCGACCACGTTGTAAATTCA
LOC_Os03g03630
Target Sequence 
AACCACGTGCTGCTCATCAGCGACATGGTCTGAGCTCTGANACTCTAANACTGNAAGCCTCTGCCNTGACAGGTGGCCGA
GCTGTGACTGATTCTTCTCTCGTCATCGAGCTCTCCTGCTCGGGTTGGTTAATTGGTTTCCTTCGAATTGAATTCGNTTA
TGACTGATCGATTCTACAGTTTAGCTAGAATAAAATGGCNAGAAAAGAACNACNCNAAATTGAACTAGCTGTGTAGTTCA
GGTAGAGTAGGTTCTTTGACTCCTGCCTCTGTGTTTGCTTTTATTCACTCGTTGTTTCTTTATACTCGGTTGAATCATCG
TCTCGGCGACCACGTTGTAAATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis