Browse Element(s) Details


Os.43415.1.A1_at

Description gb:CB621372
DB_XREF= gi:29616360
DB_XREF=OSIIEa07D10.r
CLONE=OSIIEa07D10
TID=Os.43415.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.43415 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P-450LXXIA1 (cyp71A1) family (P0452F10.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1277010/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12730Os.11710.1.S1_at11/111+7040738..7044358Ras-related protein Rab7, putative, expressed
LOC_Os01g12740Os.30664.1.S1_at11/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12740Os.45887.2.S1_x_at1/111+7045075..7047676Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.2.S1_x_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12750Os.45887.1.S1_at11/111+7049902..7053175Cytochrome P450 family protein, expressed
LOC_Os01g12760Os.43417.1.S1_at11/111+7058146..7061993Cytochrome P450 family protein, expressed
LOC_Os01g12770Os.43415.1.A1_at10/111+7068310..7070565Cytochrome P450 family protein, expressed
LOC_Os01g12780OsAffx.23219.1.S1_at8/111+7073073..7073579hypothetical protein
LOC_Os01g12790OsAffx.22085.1.S1_at11/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12790Os.27098.3.S1_x_at7/111+7076702..7082398Leucine Rich Repeat family protein
LOC_Os01g12800Os.37011.1.S1_at11/111+7082675..7085992Mpv17/PMP22 family protein, expressed
LOC_Os01g12810Os.17393.1.S1_at11/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12810Os.34746.2.S1_at1/111+7088836..7092119leaf protein, putative, expressed
LOC_Os01g12820Os.9704.1.S1_at10/111+7092409..7094190Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0004497molecular_functionmonooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046424molecular_functionferulate 5-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43415.1.A1_at--222--6731Chr01:7070128..7070152 (25 bp)
GTTCTCACCGGAGAAATTCCTCAAC
LOC_Os01g12770
Os.43415.1.A1_at--160--10751Chr01:7070160..7070184 (25 bp)
TTGACTACAAGGGACAGGACTTCGA
LOC_Os01g12770
Os.43415.1.A1_at--915--5891Chr01:7070183..7070207 (25 bp)
GAGCTGCTACCATTTGGCGCCGGTA
LOC_Os01g12770
Os.43415.1.A1_at--635--831Chr01:7070246..7070270 (25 bp)
ATGGAGATAGCACTCGCGAGCTTGC
LOC_Os01g12770
Os.43415.1.A1_at--1008--5071Chr01:7070319..7070343 (25 bp)
GCAGCCAAGCATGGGCGTTGCCAGT
LOC_Os01g12770
Os.43415.1.A1_at--80--811Chr01:7070361..7070385 (25 bp)
ATGGGATAGCTGTTCATCTCAAGTA
LOC_Os01g12770
Os.43415.1.A1_at--19--9531Chr01:7070389..7070413 (25 bp)
TCTACATGTCGTCGCTAAACCACGT
LOC_Os01g12770
Os.43415.1.A1_at--722--4831Chr01:7070402..7070425 (24 bp)
GCTAAACCACGTATGCCTTAACTTT
LOC_Os01g12770
Os.43415.1.A1_at--1132--2792Chr01:7070431..7070455 (25 bp)
AAGATGTTACCATCTGCAGTTCAAC
LOC_Os01g12770
Os.43415.1.A1_at--271--3431NONE
CAGTTCAACTGATAGGACCCTGGTT
NONE
Os.43415.1.A1_at--295--3671Chr01:7070510..7070534 (25 bp)
CTATCAATGTAGACCTCACTCGAGG
LOC_Os01g12770
Target Sequence 
GTTCTCACCGGAGAAATTCCTCAACNGCNCCATTGACTACAAGGGACAGGACTTCGAGCTGCTACCATTTGGCGCCGGTA
GGAGGGGGTGCCCCGGGATCGTGTTCGGGGTGTCAGCCATGGAGATAGCACTCGCGAGCTTGCTCTACCATTTTGACTGG
GAGGCGGCGGCAACTGATCACAGGAGGAGGGGCAGCCAAGCATGGGCGTTGCCAGTNGACATGAGTGAGGTCAATGGGAT
AGCTGTTCATCTCAAGTATGNTCTACATGTCGTCGCTAAACCACGTATGCCTTAACTTTAGAAAAGATGTTACCATCTGC
AGTTCAACTGATAGGACCCTGGTTATGTATTGGTTGATTAACTTTTGAGGATATGGGATATCCTATCAATGTAGACCTCA
CTCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43415.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis