Browse Element(s) Details


Os.4459.2.S1_x_at

Description gb:AK069048.1
DB_XREF= gi:32979072
TID=Os.4459.2
CNT=38
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4459 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU069906(E11917),D48439(S14636), D46007(S10373),AU030823(E60306) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana DNA chromosome 4, P1 clone M7J2; putative protein (AL022197) (G ...
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009M14, full insert sequence.
FL= gb:AK119655.1 gb:AK069048.1 gb:AK099098.1 gb:AK060795.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0360011/11transcriptional co-regulator family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03530Os.45910.1.S2_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03530Os.45910.1.S1_at11/116+1362000..1366554pentatricopeptide, putative, expressed
LOC_Os06g03540Os.17167.1.S1_at11/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03540Os.34161.2.S1_x_at1/116+1363911..1367984oligopeptide transporter 9, putative, expressed
LOC_Os06g03550OsAffx.4705.1.S1_at11/116+1369307..1369864hypothetical protein
LOC_Os06g03560Os.52527.1.S1_s_at11/116+1370853..1374402oligopeptide transporter 9, putative, expressed
LOC_Os06g03570Os.48018.1.S1_at11/116+1376617..1378368pentatricopeptide, putative, expressed
LOC_Os06g03580Os.4458.1.S1_at11/116+1382619..1385078Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g03590NANA6+1386981..1387505transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g03600Os.4459.2.S1_x_at11/116+1388083..1394802transcriptional co-regulator family protein, putative, expressed
LOC_Os06g03610Os.44814.2.S1_at5/116+1397432..1399969protein kinase family protein, putative
LOC_Os06g03620NANA6+1400862..1401152hypothetical protein
LOC_Os06g03630OsAffx.15248.1.S1_s_at11/116+1404688..1405608hypothetical protein
LOC_Os06g03630OsAffx.15248.1.S1_at11/116+1404688..1405608hypothetical protein
LOC_Os06g03640Os.10179.1.S1_at11/116+1413222..1415364BAG domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003712molecular_functiontranscription cofactor activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4459.2.S1_x_at--666--3471Chr06:1388606..1388630 (25 bp)
CAGGTGGTGGCTACTCATGGAACAT
LOC_Os06g03600
Os.4459.2.S1_x_at--843--5491Chr06:1388587..1388611 (25 bp)
GAACATGTGACAAATGCTTGCCTGC
LOC_Os06g03600
Os.4459.2.S1_x_at--153--4471Chr06:1388568..1388592 (25 bp)
GCCTGCTTGGCTTCTTGGTGATGAT
LOC_Os06g03600
Os.4459.2.S1_x_at--1102--8511Chr06:1388544..1388568 (25 bp)
TGGAAACTGCCGTAGATTCTAGCTT
LOC_Os06g03600
Os.4459.2.S1_x_at--110--10051Chr06:1388532..1388556 (25 bp)
TAGATTCTAGCTTCTCGTCTTGTTC
LOC_Os06g03600
Os.4459.2.S1_x_at--141--10871Chr06:1388401..1388425 (25 bp)
TTGGCTTGGAATGCTGAGATCGAAC
LOC_Os06g03600
Os.4459.2.S1_x_at--347--1371Chr06:1388375..1388399 (25 bp)
AGAGCTGCTTCTGCTAGCACACATC
LOC_Os06g03600
Os.4459.2.S1_x_at--318--3011Chr06:1388331..1388355 (25 bp)
AATGACAACGTCTGGCGATTACTAT
LOC_Os06g03600
Os.4459.2.S1_x_at--428--591Chr06:1388258..1388282 (25 bp)
ATGCCATATGATTGTCGATTCAGCG
LOC_Os06g03600
Os.4459.2.S1_x_at--215--6551Chr06:1388187..1388211 (25 bp)
GATTTTGCACGAGTTTTCTGGGATT
LOC_Os06g03600
Os.4459.2.S1_x_at--473--2431Chr06:1388142..1388166 (25 bp)
AAAACCCGCCTGTAATCTGCTGTAT
LOC_Os06g03600
Target Sequence 
CAGGTGGTGGCTACTCATGGAACATGTGACAAATGCTTGCCTGCTTGGCTTCTTGGTGATGATGGAAACTGCCGTAGATT
CTAGCTTCTCGTCTTGTTCTTTTTTGTTTTGGGTATGTGGAGTTTTTGTTTGGGGTGTCTGAAACAGTTTCTGATGATGA
TGATACACTGATGTAATTTAAGCGTTATGTGCGCTGGTAAGTGAGTTGGCTTGGAATGCTGAGATCGAACCAGAGCTGCT
TCTGCTAGCACACATCGAGGCCCATCANACTGCTGAATGACAACGTCTGGCGATTACTATTATTTACTTTANTNNNNNTN
NNNTNATTTTAATTTTTGTATCTTTATAATGCCATATGATTGTCGATTCAGCGAAGAAATTTTTATAGTAGGATTTACTC
CAAAATCCTGGAATGGAAGGATTTTGCACGAGTTTTCTGGGATTTGAAATAGTTCCTGAAAGAAAAAACCCGCCTGTAAT
CTGCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4459.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis