Browse Element(s) Details


Os.44828.1.A1_at

Description gb:NM_185417.1
DB_XREF= gi:34897919
TID=Os.44828.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana Skp1 homolog (AF059295) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) Similar to Arabidopsis thaliana Skp1 homolog (AF059295) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0236011/11Skp1 family, dimerisation domain containing protein, expressed
LOC_Os06g023501/11Skp1 family, dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02304OsAffx.16205.1.S1_at2/116+757634..764184retrotransposon protein, putative, unclassified
LOC_Os06g02320Os.31468.2.S1_at10/116+775290..775691hypothetical protein
LOC_Os06g02330Os.31468.1.S1_at10/116+776223..778771expressed protein
LOC_Os06g02340Os.23621.1.S1_a_at11/116+778996..781324F-box domain containing protein, expressed
LOC_Os06g02350OsAffx.15232.1.S1_x_at11/116+781722..782180Skp1 family, dimerisation domain containing protein
LOC_Os06g02350Os.44828.1.A1_at1/116+781722..782180Skp1 family, dimerisation domain containing protein
LOC_Os06g02360Os.44828.1.A1_at11/116+785864..786614Skp1 family, dimerisation domain containing protein, expressed
LOC_Os06g02370Os.4506.3.S1_x_at11/116+795317..799813expressed protein
LOC_Os06g02380Os.51795.1.S1_at11/116+810040..815535RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os06g02380Os.12628.1.S1_at11/116+810040..815535RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44828.1.A1_at--604--3931Chr06:786452..786476 (25 bp)
CGGCAATCAATCACCAAACGTGGGT
LOC_Os06g02360
Os.44828.1.A1_at--26--2391Chr06:786437..786461 (25 bp)
AAACGTGGGTCGTCTCAGAGATCGA
LOC_Os06g02360
Os.44828.1.A1_at--1154--6431Chr06:786414..786438 (25 bp)
GATCAGCTTCAGAATTCGCCGTCGA
LOC_Os06g02360
Os.44828.1.A1_at--384--5211Chr06:786403..786427 (25 bp)
GAATTCGCCGTCGATCAATTTAGAC
LOC_Os06g02360
Os.44828.1.A1_at--203--191Chr06:786386..786410 (25 bp)
ATTTAGACATCTATCAGCTCGCGTG
LOC_Os06g02360
Os.44828.1.A1_at--1056--391Chr06:786374..786398 (25 bp)
ATCAGCTCGCGTGACATCATCAATG
LOC_Os06g02360
Os.44828.1.A1_at--268--772Chr06:786259..786283 (25 bp)
ATGTCGCGGATACTCCTCCACATGA
LOC_Os06g02360
Os.44828.1.A1_at--526--1051Chr06:786057..786081 (25 bp)
AGGTGGGCATCGACATGCTGTACGA
LOC_Os06g02360
Os.44828.1.A1_at--996--611Chr06:786043..786067 (25 bp)
ATGCTGTACGACCTGATCATGGCGG
LOC_Os06g02360
Os.44828.1.A1_at--515--411Chr06:786028..786052 (25 bp)
ATCATGGCGGCCAACTTCATGGGCG
LOC_Os06g02360
Os.44828.1.A1_at--70--10551Chr06:786013..786037 (25 bp)
TTCATGGGCGTGGAGGGCCTTCTCA
LOC_Os06g02360
Target Sequence 
CGGCAATCAATCACCAAACGTGGGTCGTCTCAGAGATCGATCAGCTTCAGAATTCGCCGTCGATCAATTTAGACATCTAT
CAGCTCGCGTGACATCATCAATGGCGGCGGCGGCAGAAGAGAAGAACAAGAAGATGATCAAGGTGATCAGCTCCGACGGG
GAGGCCTTCGAGATGACGGAGGCGGCGGCGAGCATGTCGCGGATACTCCTCCACATGATCGAGGACGGCTGCACCGGCGA
CGGCGGCGCCGGGATCACTCTCCCCAACGTCGCCGGCAGCGCCCTCGCCAAGGTCATCGAGTACTGCACCAAGCACGCCA
TCGCCGCCGCCGAAGGTAGCAGCAGCAGCCGCAAGGCGAAGGAGGAGCTGAAGAAGTTCGACGTGGAGTTCATGGAGGTG
GGCATCGACATGCTGTACGACCTGATCATGGCGGCCAACTTCATGGGCGTGGAGGGCCTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44828.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis