Browse Element(s) Details


Os.455.1.S1_at

Description gb:CF321434
DB_XREF= gi:33693195
DB_XREF=HD--12-L01.b1
CLONE=HD--12-L01
TID=Os.455.1
CNT=19
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.455 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1624011/11Calmodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16200OsAffx.23267.1.S1_at11/111+9168430..9169701Serpin family protein
LOC_Os01g16210Os.46043.1.A1_s_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16210OsAffx.23268.1.S1_at11/111+9169909..9172537Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g16220Os.24775.1.A1_s_at11/111+9176018..9178676expressed protein
LOC_Os01g16230OsAffx.23270.1.S1_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16230OsAffx.23270.1.S1_x_at11/111+9189051..9190241Protein kinase domain containing protein
LOC_Os01g16240Os.455.1.S1_at11/111+9192330..9195757Calmodulin, putative, expressed
LOC_Os01g16240Os.57504.1.S1_x_at1/111+9192330..9195757Calmodulin, putative, expressed
LOC_Os01g16250Os.49712.1.S1_at11/111+9198156..9199174expressed protein
LOC_Os01g16260Os.10292.1.S1_at9/111+9201107..9208445transporter, putative, expressed
LOC_Os01g16260Os.57395.1.S1_at1/111+9201107..9208445transporter, putative, expressed
LOC_Os01g16270NANA1+9212477..9216283retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16280NANA1+9217884..9218306hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0009652biological_processthigmotropism
GO:0019722biological_processcalcium-mediated signaling
GO:0030163biological_processprotein catabolism
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.455.1.S1_at--1027--4931Chr01:9192915..9192939 (25 bp)
GCTTGGAACTGTGATGCGCTCATTA
LOC_Os01g16240
Os.455.1.S1_at--658--6351Chr01:9192903..9192927 (25 bp)
GATGCGCTCATTAGGGCAGAACCCC
LOC_Os01g16240
Os.455.1.S1_at--184--2311Chr01:9192831..9192855 (25 bp)
AAATGGAACGATTGACTTTCCTGAG
LOC_Os01g16240
Os.455.1.S1_at--961--8091Chr01:9192726..9192750 (25 bp)
GGACCAGAATGGCTTCATCTCGGCA
LOC_Os01g16240
Os.455.1.S1_at--379--8251Chr01:9192705..9192729 (25 bp)
GGCAGCTGAACTCCGTCATGTCATG
LOC_Os01g16240
Os.455.1.S1_at--1061--7371Chr01:9192564..9192588 (25 bp)
GTGAGATGCCATCTAGTTACTCTCC
LOC_Os01g16240
Os.455.1.S1_at--231--411Chr01:9192554..9192578 (25 bp)
ATCTAGTTACTCTCCTGGTGGTAGT
LOC_Os01g16240
Os.455.1.S1_at--1075--7751Chr01:9192535..9192559 (25 bp)
GGTAGTAACCAGTGTAGCTTTGAAA
LOC_Os01g16240
Os.455.1.S1_at--1150--6851Chr01:9192472..9192496 (25 bp)
GTTTGTTTTCTTCTCAGGAATGTTT
LOC_Os01g16240
Os.455.1.S1_at--402--8571Chr01:9192397..9192421 (25 bp)
TGGTACAATGATGCTTTCACCCTCC
LOC_Os01g16240
Os.455.1.S1_at--1093--4871Chr01:9192385..9192409 (25 bp)
GCTTTCACCCTCCAAATTGTCATAA
LOC_Os01g16240
Target Sequence 
GCTTGGAACTGTGATGCGCTCATTAGGGCAGAACCCCACTGAGGCTGAGCTTCAGGACATGATCAACGAGGTGGATGCTG
ATGGAAATGGAACGATTGACTTTCCTGAGTTTCTCAACCTGATGGCACGCAAGATGAAGGACACTGATTCTGAGGAGGAG
CTCAAGGAAGCCTTCCGTGTATTTGACAAGGACCAGAATGGCTTCATCTCGGCAGCTGAACTCCGTCATGTCATGACCAA
CCTTGGTGAGAAGCTTACAGACGAGGAGGTGGACGAGATGATCCGTGAGGCTGATGTCGATGGTGATGGTCAGATCAATT
ACGAAGAATTCGTGAAGGTGATGATGGCCAAGTGAGATGCCATCTAGTTACTCTCCTGGTGGTAGTAACCAGTGTAGCTT
TGAAAACTGACAGCATTTGGTTATGGGAATGAACATGTTTGTTGTTTGTTTTCTTCTCAGGAATGTTTGGTAATTTCGTT
TGGATTTTGTTTGCAGTTGTACAACATTTGTGTTATCTTGGTACAATGATGCTTTCACCCTCCAAATTGTCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis