Browse Element(s) Details


Os.45747.1.S1_x_at

Description gb:NM_183695.1
DB_XREF= gi:34894517
GEN=P0551A11.23
TID=Os.45747.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0551A11.23 (P0551A11.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0551A11.23 (P0551A11.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2093011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20890OsAffx.11133.1.S1_at11/111+11645388..11646793hypothetical protein
LOC_Os01g20894Os.56979.1.S1_at11/111+11649742..11650182expressed protein
LOC_Os01g20894Os.56979.1.S1_x_at10/111+11649742..11650182expressed protein
LOC_Os01g20900OsAffx.11132.1.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.2.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.1.S1_at10/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900OsAffx.11132.1.S1_at8/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20910Os.45749.1.A1_at11/111+11668923..11669866Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20920OsAffx.22904.1.S1_x_at11/111+11670469..11670831expressed protein
LOC_Os01g20920OsAffx.22904.1.S1_at11/111+11670469..11670831expressed protein
LOC_Os01g20930Os.45747.1.S1_x_at11/111+11671382..11673456Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20940Os.13500.2.S1_x_at11/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20940Os.13500.1.S1_at10/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20950Os.32222.1.S1_at11/111+11685728..11687134Sulfotransferase domain containing protein, expressed
LOC_Os01g20960OsAffx.11135.1.S1_at10/111+11693383..11693664hypothetical protein
LOC_Os01g20970Os.8072.1.S1_at11/111+11696092..11697165pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g20980Os.37598.1.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed
LOC_Os01g20980Os.37598.2.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0006952biological_processdefense response
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45747.1.S1_x_at--699--5451Chr01:11672873..11672897 (25 bp)
GAACGAGCTCGAGCGTCTCCGGTGA
LOC_Os01g20930
Os.45747.1.S1_x_at--438--1592Chr01:11672878..11672902 (25 bp)
AGCTCGAGCGTCTCCGGTGACACGG
LOC_Os01g20930
Os.45747.1.S1_x_at--141--7151Chr01:11672887..11672911 (25 bp)
GTCTCCGGTGACACGGACGCGGACT
LOC_Os01g20930
Os.45747.1.S1_x_at--881--4251Chr01:11672891..11672915 (25 bp)
CCGGTGACACGGACGCGGACTCCGT
LOC_Os01g20930
Os.45747.1.S1_x_at--534--9391Chr01:11673008..11673032 (25 bp)
TCGTCTACCTCTACTTCTGGAGGGT
LOC_Os01g20930
Os.45747.1.S1_x_at--577--1751Chr01:11673014..11673038 (25 bp)
ACCTCTACTTCTGGAGGGTGTTCTC
LOC_Os01g20930
Os.45747.1.S1_x_at--1101--2051Chr01:11673020..11673044 (25 bp)
ACTTCTGGAGGGTGTTCTCGCGCAA
LOC_Os01g20930
Os.45747.1.S1_x_at--1124--8031Chr01:11673252..11673276 (25 bp)
GGAGCTGAGGGACGGCGACGAGTGC
LOC_Os01g20930
Os.45747.1.S1_x_at--109--3971Chr01:11673301..11673325 (25 bp)
CGGTTCCACGCGTCGTGCGTCGACG
LOC_Os01g20930
Os.45747.1.S1_x_at--1057--7711Chr01:11673326..11673350 (25 bp)
GGTGGCTGCGGCTGCACACCACCTG
LOC_Os01g20930
Os.45747.1.S1_x_at--485--5051Chr01:11673398..11673422 (25 bp)
GCAAAGGTGGCGTGGCGGACACGAC
LOC_Os01g20930
Target Sequence 
GAACGAGCTCGAGCGTCTCCGGTGACACGGACGCGGACTCCGTGCCCACCGCCGACGCCGCCGCCCCGCTCTGGGCGCCG
CACGGCCGCGCGCTCACGGGCTGCCTCGTCGTCGTCAACGTCGCGCTCGTCCTCCTCGTCTACCTCTACTTCTGGAGGGT
GTTCTCGCGCAAGNGCGCCGCCGCTGCAGCCTCCGCGCGCAGNNACGACGACGACGACGACGACGAGGCGTCGTCCTCCG
CCTCGGCTCCGCCCCCGGCCGCGGCGGCCGTNCTCTGTGAGGACCCGGGNACGACGTGCTGGCGTNCGCTGCCCGTGTTN
CGTCGTGCGCTNCGTCCGGNCGGGGAGAANGGCGGAGGCGGAGGCGGNGTGCGCGGTGTGCATCGCGGAGCTGAGGGACG
GCGACGAGTGCCGCGCGCTGCCGCGGTGCGGGCACCGGTTCCACGCGTCGTGCGTCGACGGGTGGCTGCGGCTGCACACC
ACCTGCCCGCTCTGCCGTGCCAGCGTCGTCGCCCTCGCCGCCGCCCCGGAGCGCAAAGGTGGCGTGGCGGACACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45747.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis