Browse Element(s) Details


Os.45880.1.S1_at

Description gb:NM_192600.1
DB_XREF= gi:34912283
GEN=P0451D05.2
TID=Os.45880.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0451D05.2 (P0451D05.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0451D05.2 (P0451D05.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g410301/1150S ribosomal protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40990Os.8689.1.S1_at11/111+23516210..23540540expressed protein
LOC_Os01g41000Os.35033.1.S1_x_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41000OsAffx.9169.1.S1_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41010Os.23844.1.A1_at11/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41010Os.5777.1.S1_x_at5/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41020OsAffx.11416.1.S1_at11/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_at6/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_x_at3/111+23554720..23559224hypothetical protein
LOC_Os01g41030Os.45880.1.S1_at1/111+23562064..2356452050S ribosomal protein, putative, expressed
LOC_Os01g41040OsAffx.11417.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41040Os.35080.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41050OsAffx.29576.1.S1_at11/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050Os.27925.2.A1_at1/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050OsAffx.29576.3.S1_x_at1/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41060Os.28943.1.S1_x_at2/111+23580829..23584004retrotransposon protein, putative, unclassified
LOC_Os01g41070NANA1+23584630..23590807retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45880.1.S1_at--1053--7571Chr01:23562260..23562284 (25 bp)
GGGCTTACTTCAACACCATAAAACG
LOC_Os01g41030
Os.45880.1.S1_at--414--491Chr01:23558722..23558746 (25 bp)
ATCTGGCATGATGACTGTTACTATA
NONE
Os.45880.1.S1_at--680--6471Chr01:23558660..23558684 (25 bp)
GATACGGGACCGAGATGACCACACT
NONE
Os.45880.1.S1_at--343--691Chr01:23558646..23558670 (25 bp)
ATGACCACACTTCGATTTCACACTT
NONE
Os.45880.1.S1_at--781--7031Chr01:23556142..23556166 (25 bp)
GTACAATAACACTTACCACTCCACA
NONE
Os.45880.1.S1_at--683--1991NONE
ACTCCACACTGGACAAGATTTCCGC
NONE
Os.45880.1.S1_at--870--2791Chr01:23555534..23555558 (25 bp)
AAGATTTCCGCATGCACCGTCTTGG
NONE
Os.45880.1.S1_at--998--2771Chr01:23555494..23555518 (25 bp)
AAGAGTGGGTGCTTGTCAGGCCTTC
NONE
Os.45880.1.S1_at--416--8091Chr01:23555441..23555465 (25 bp)
GGACACGACCACTCCAAGGAACCAG
NONE
Os.45880.1.S1_at--825--5611Chr01:23555300..23555324 (25 bp)
GACAAGCTACAGGAACCTTTCGCTC
NONE
Os.45880.1.S1_at--172--4391Chr01:23555268..23555292 (25 bp)
GCCAAGACGGAGGAAGCCCAACTCT
NONE
Target Sequence 
GGGCTTACTTCAACACCATAAAACGAACTGTCNAGTATNNGTGCCCTGCTGACATAGNTGCCACCATACATNGAGGTGGA
TNTAANTNNNTNNNNTNNNNNNNNNNNNNTATTGTCATCTGGCATGATGACTGTTACTATAACAACACGATATGGCGAGG
AAGCGAAAAAACGAACACGATACGGGACCGAGATGACCACACTTCGATTTCACACTTCACATGACAAGGAGTTATGGTAC
AATAACACTTACCACTCCACACTGGACAAGATTTCCGCATGCACCGTCTTGGGGGCAAGCTGGTTTCAAGAGTGGGTGCT
TGTCAGGCCTTCACCAAGGCGGCCTGGAGGACTCAAGGGGGGACACGACCACTCCAAGGAACCAGACAAACAAGAACAAG
ATGGTGGAACCCAAGAAGAAGAAGCTGAGATCATGGAGGACCAAGGAGGGAAGCTGGACTTCAAGCTAGAAGCTGCAAAT
CGTAAGGGAGGAGGCGTGCCGGACAAGCTACAGGAACCTTTCGCTCCACTTGGGCCAAGACGGAGGAAGCCCAACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis