Browse Element(s) Details


Os.45982.1.A1_at

Description gb:CB651281
DB_XREF= gi:29646274
DB_XREF=OSJNEb16C23.r
CLONE=OSJNEb16C23
TID=Os.45982.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.45982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0432C03.11 (P0432C03.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g264609/11zinc finger family protein, putative, expressed
LOC_Os04g540501/11hypothetical protein
LOC_Os09g377901/11D-mannose binding lectin family protein, expressed
LOC_Os08g131901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g424481/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26420Os.5850.1.S1_at11/119+15958400..15961886AP2 domain containing protein, expressed
LOC_Os09g26430Os.7529.1.S2_at11/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26430Os.7529.1.S1_at7/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26440NANA9+15979639..15979959expressed protein
LOC_Os09g26460Os.50359.1.S1_at11/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_x_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45817.1.S1_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_at9/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460OsAffx.18435.1.S1_x_at1/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26470OsAffx.17910.1.S1_at11/119+15990280..15995928IBR domain containing protein, expressed
LOC_Os09g26480OsAffx.17911.1.S1_at11/119+16001196..16002357hypothetical protein
LOC_Os09g26490OsAffx.6406.1.S1_at11/119+16008645..16009892esterase, putative
LOC_Os09g26500OsAffx.30039.1.S1_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26500OsAffx.30039.2.S1_s_at11/119+16011760..16014413serine hydrolase, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45982.1.A1_at--1039--325108Chr12:21745309..21745333 (25 bp)
CAAAGGATTTGCAAAACAACCTTGC
NONE
Os.45982.1.A1_at--772--3111Chr09:15984696..15984720 (25 bp)
AATATATATATAGTTCCTACACCTT
LOC_Os09g26460
Os.45982.1.A1_at--869--10191Chr09:15984690..15984714 (25 bp)
TATATAGTTCCTACACCTTGAAATG
LOC_Os09g26460
Os.45982.1.A1_at--534--1231Chr09:15984685..15984709 (25 bp)
AGTTCCTACACCTTGAAATGAAGAT
LOC_Os09g26460
Os.45982.1.A1_at--225--673Chr01:41708233..41708256 (24 bp)
ATGAAGAATAGGGTTTCGTCCTAGT
NONE
Os.45982.1.A1_at--937--6595Chr11:23531987..23532011 (25 bp)
GTTGGTGTTTCCTCGTTCGTGTCGT
NONE
Os.45982.1.A1_at--1039--6776Chr11:23531993..23532017 (25 bp)
GTTTCCTCGTTCGTGTCGTCGGTTG
NONE
Os.45982.1.A1_at--705--10571Chr09:15984535..15984559 (25 bp)
TTCTCGGGCTGTTCTAAAATGCAAC
LOC_Os09g26460
Os.45982.1.A1_at--921--7571Chr09:15984530..15984554 (25 bp)
GGGCTGTTCTAAAATGCAACCTAAG
LOC_Os09g26460
Os.45982.1.A1_at--1021--5131NONE
GCAACCTAAGTTAAGATGTGGCACT
NONE
Os.45982.1.A1_at--562--2631NONE
AACCTAAGTTAAGATGTGGCACTGT
NONE
Target Sequence 
CAAAGGATTTGCAAAACAACCTTGCCTCTCTTCCAAGCTTGCATCAAACACCTAAATTCTCGTGACTTGCTGAGTACGAA
AGTACTCACCCTTGCTCTATATAAATATATATATAGTTCCTACACCTTGAAATGAAGATGAAGTGAAATGAAGAATAGGG
TTTCGTCCTAGTTCCCAGCCGTCGCCTGTGGTGTTGGGTGTTAGTCCGTTGGTTCCGCTGCTGCTGCTGCTGTTGGTGTT
TCCTCGTTCGTGTCGTCGGTTGCATTCTCGGGCTGTTCTAAAATGCAACCTAAGTTAAGATGTGGCACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45982.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis