Browse Element(s) Details


Os.46022.1.S1_x_at

Description gb:CF320664
DB_XREF= gi:33692425
DB_XREF=HD--11-K07.g1
CLONE=HD--11-K07
TID=Os.46022.1
CNT=13
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome1, At1g09310 (P0022B05.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0285011/11expressed protein
LOC_Os07g029402/11expressed protein
LOC_Os07g029201/11expressed protein
LOC_Os07g029001/11hypothetical protein
LOC_Os07g027001/11hypothetical protein
LOC_Os07g026901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02800Os.10333.1.S1_at11/117+1044316..1046349myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g02810Os.7637.1.S1_at11/117+1053441..1056428L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os07g02820OsAffx.28240.1.S1_at11/117+1059647..1060707expressed protein
LOC_Os07g02840NANA7+1062506..1064009hypothetical protein
LOC_Os07g02850Os.46022.1.S1_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.46022.1.S1_x_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.23172.1.S1_x_at4/117+1065317..1066167expressed protein
LOC_Os07g02850Os.40003.1.S1_x_at1/117+1065317..1066167expressed protein
LOC_Os07g02860OsAffx.28241.1.S1_at11/117+1067613..1069134hypothetical protein
LOC_Os07g02870OsAffx.5189.1.S1_at11/117+1074925..1075645hypothetical protein
LOC_Os07g02870Os.23172.1.S1_x_at1/117+1074925..1075645hypothetical protein
LOC_Os07g02880Os.36607.1.S1_x_at11/117+1079262..1080033expressed protein
LOC_Os07g02880Os.23172.1.S1_x_at1/117+1079262..1080033expressed protein
LOC_Os07g02890Os.40458.1.S1_at11/117+1081104..1082724F-box domain containing protein, expressed
LOC_Os07g02900Os.23172.1.S1_x_at3/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.46022.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.40003.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02910Os.31486.1.S1_at11/117+1085689..1087509F-box domain containing protein, expressed
LOC_Os07g02920Os.40003.1.S1_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.40003.1.S1_x_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.23172.1.S1_x_at3/117+1087792..1088466expressed protein
LOC_Os07g02920Os.46022.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02920Os.36607.1.S1_x_at1/117+1087792..1088466expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46022.1.S1_x_at--649--952Chr07:1065580..1065604 (25 bp)
AGGAAACAGGATTCATGTGGCTGGT
LOC_Os07g02850
Os.46022.1.S1_x_at--716--8196Chr07:1065610..1065634 (25 bp)
GGAAGAAGAAGATCGAGCACACCTT
LOC_Os07g02850
Os.46022.1.S1_x_at--148--1391Chr07:1065649..1065673 (25 bp)
AGACCGTGTCCTACGCCGGCGAGGT
LOC_Os07g02850
Os.46022.1.S1_x_at--127--10811Chr07:1065751..1065775 (25 bp)
TTGTCGAGGTCTATGTCGCCGAGGC
LOC_Os07g02850
Os.46022.1.S1_x_at--1102--7571Chr07:1065810..1065834 (25 bp)
GGGCTGTCTGATACCTTCGACGCCA
LOC_Os07g02850
Os.46022.1.S1_x_at--527--4091Chr07:1065827..1065851 (25 bp)
CGACGCCACTGCATTTGCTCTTGGG
LOC_Os07g02850
Os.46022.1.S1_x_at--281--3831Chr07:1065888..1065912 (25 bp)
CTGAATTCTGGTTAAGTTGCCTTAG
LOC_Os07g02850
Os.46022.1.S1_x_at--396--9992Chr07:1066014..1066038 (25 bp)
TAGAGTAAAGTGTATGGGCGGTCTT
LOC_Os07g02850
Os.46022.1.S1_x_at--681--7731Chr07:1066051..1066075 (25 bp)
GGTGTGTCATCTGGGTTTTTAAACT
LOC_Os07g02850
Os.46022.1.S1_x_at--4--7131Chr07:1066056..1066080 (25 bp)
GTCATCTGGGTTTTTAAACTCTCAA
LOC_Os07g02850
Os.46022.1.S1_x_at--453--3071Chr07:1066093..1066117 (25 bp)
AATACCAGAACTTATCGTAGGGAGG
LOC_Os07g02850
Target Sequence 
AGGAAACAGGATTCATGTGGCTGGTGCAGAGGAAGAAGAAGATCGAGCACACCTTCAAGAAGATCAAGCAGACCGTGTCC
TACGCCGGCGAGGTCACGGCGTTCGTCGAGAAGGGGAAGCTGAAGAAGATCGCCGGCGTGAAGACCAAGGAGCTGCTGCT
CTGGCTCAGCGTTGTCGAGGTCTATGTCGCCGAGGCCTCGCCGGAGAAGGTCACCTTCAAGACGGGAACCGGGCTGTCTG
ATACCTTCGACGCCACTGCATTTGCTCTTGGGGAGTNAGAAGTTGACACGTAAGATTGGGGGTCTATGACTGAATTCTGG
TTAAGTTGCCTTAGTTATTTGTTCATGAAAGTCGAGACATGCAAGCTTTATTTTCGCTTTTATATGAAAAGAAATTTTAT
GGTTATTGAGGAAGTATCTCGAGATACTTAAATTTTAGAGTAAAGTGTATGGGCGGTCTTTAAACTTGTAGGGGTGTGTC
ATCTGGGTTTTTAAACTCTCAAAATACATATCCNAATACCAGAACTTATCGTAGGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46022.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis