Browse Element(s) Details


Os.46219.1.S1_at

Description gb:AK105837.1
DB_XREF= gi:32991046
TID=Os.46219.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-F02, full insert sequence.
FL= gb:AK105837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g167098/11signal peptidase I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16670Os.16612.1.S1_at8/112+9523651..9531796PP-loop family protein, expressed
LOC_Os02g16680Os.49514.1.S1_at11/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16680Os.1502.1.S1_at1/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16690OsAffx.2642.1.S1_s_at11/112+9539378..9542538expressed protein
LOC_Os02g16690Os.24736.1.A1_at11/112+9539378..9542538expressed protein
LOC_Os02g16709Os.24631.1.A1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.12074.1.S1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.24631.1.A1_s_at9/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.46219.1.S1_at8/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.28164.2.S1_at1/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16730OsAffx.2643.1.S1_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16730OsAffx.2643.1.S1_x_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16740OsAffx.24282.1.S1_at11/112+9555585..9555815hypothetical protein
LOC_Os02g16750OsAffx.12075.1.S1_at10/112+9559186..9559881hypothetical protein
LOC_Os02g16760OsAffx.24283.1.S1_at11/112+9562675..9563847F-box domain containing protein
LOC_Os02g16770OsAffx.12076.1.S1_at11/112+9565901..9568320hypothetical protein
LOC_Os02g16780OsAffx.24284.4.S1_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16780OsAffx.24284.4.S1_x_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16790NANA2+9571150..9571803hypothetical protein
LOC_Os02g16800OsAffx.24284.3.S1_at11/112+9574545..9575500Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016020cellular_componentmembrane
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46219.1.S1_at--462--9151Chr02:9550442..9550466 (25 bp)
TGCGACTCTCGCTCTTTGTTGTATA
LOC_Os02g16709
Os.46219.1.S1_at--990--4591Chr02:9550443..9550467 (25 bp)
GCGACTCTCGCTCTTTGTTGTATAT
LOC_Os02g16709
Os.46219.1.S1_at--1052--4091Chr02:9550444..9550468 (25 bp)
CGACTCTCGCTCTTTGTTGTATATT
LOC_Os02g16709
Os.46219.1.S1_at--778--5711Chr02:9550445..9550469 (25 bp)
GACTCTCGCTCTTTGTTGTATATTA
LOC_Os02g16709
Os.46219.1.S1_at--532--2011Chr02:9550446..9550470 (25 bp)
ACTCTCGCTCTTTGTTGTATATTAA
LOC_Os02g16709
Os.46219.1.S1_at--649--3771Chr02:9550447..9550471 (25 bp)
CTCTCGCTCTTTGTTGTATATTAAG
LOC_Os02g16709
Os.46219.1.S1_at--278--9511Chr02:9550448..9550472 (25 bp)
TCTCGCTCTTTGTTGTATATTAAGA
LOC_Os02g16709
Os.46219.1.S1_at--1017--3791Chr02:9550449..9550473 (25 bp)
CTCGCTCTTTGTTGTATATTAAGAC
LOC_Os02g16709
Os.46219.1.S1_at--277--9691NONE
TCACTTCATGCCCTTACATGTTGCT
NONE
Os.46219.1.S1_at--1056--3311NONE
CACTTCATGCCCTTACATGTTGCTA
NONE
Os.46219.1.S1_at--765--2051NONE
ACTTCATGCCCTTACATGTTGCTAA
NONE
Target Sequence 
TGCGACTCTCGCTCTTTGTTGTATATTAAGACNGTAAGGATGTNGCCTTAGTGATTCGCATCAAATGNATTNTTNTNGNA
CATCNCGTTTTGTAGCANCACNNGTGTATCATCCTCATACAGTGCTTGACAAAANATGTGTAACGCGTTGAGCCGNCNGT
TCACTTCATGCCCTTACATGTTGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis