Browse Element(s) Details


Os.46399.1.A1_at

Description gb:NM_196593.1
DB_XREF= gi:37534545
TID=Os.46399.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46399 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative transposase (OSJNBa0073D04.3), mRNA.
PROD=putative transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2917010/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29100OsAffx.20327.1.S1_at11/1110+14837382..14838491BTB/POZ domain containing protein
LOC_Os10g29110Os.46820.1.S1_at10/1110+14839923..14841488BTB/POZ domain containing protein, expressed
LOC_Os10g29120OsAffx.30584.2.S1_at10/1110+14842175..14843661BTB/POZ domain containing protein
LOC_Os10g29130OsAffx.30582.1.S1_s_at10/1110+14847117..14847476hypothetical protein
LOC_Os10g29150OsAffx.8109.1.S1_at11/1110+14853400..14854572BTB/POZ domain containing protein, expressed
LOC_Os10g29159OsAffx.10196.1.S1_x_at1/1110+14857358..14857600hypothetical protein
LOC_Os10g29170Os.46399.1.A1_at10/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29170OsAffx.15781.5.S1_x_at3/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29170OsAffx.15781.4.S1_x_at2/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29180Os.46505.1.S1_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.3.S1_x_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.2.S1_x_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.2.S1_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29190Os.46819.2.S1_x_at1/1110+14875669..14876711BTB/POZ domain containing protein
LOC_Os10g29210NANA10+14879865..14881141retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29220Os.46819.2.S1_x_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29220Os.46819.1.S1_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29230NANA10+14888861..14889970BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46399.1.A1_at--409--3651NONE
CTTCTCTATATTCGATGGCGGAGGT
NONE
Os.46399.1.A1_at--894--10191Chr10:14861928..14861948 (21 bp)
TATTCGATGGCGGAGGTACAGCGAC
LOC_Os10g29170
Os.46399.1.A1_at--60--4591Chr10:14861908..14861932 (25 bp)
GCGACGATGACGACTCTTACCCTTC
LOC_Os10g29170
Os.46399.1.A1_at--236--371Chr10:14861873..14861897 (25 bp)
ATCAACCTCGATGACAGGGCTAGGC
LOC_Os10g29170
Os.46399.1.A1_at--446--8331Chr10:14861837..14861861 (25 bp)
GGCGACGGCCGTCCTTCTTTCTTCT
LOC_Os10g29170
Os.46399.1.A1_at--1065--10312Chr02:5550694..5551109 (25 bp)
TTTCTTCTCCTCTGCCTTAAAGCAA
NONE
Os.46399.1.A1_at--244--4111Chr10:14861697..14861721 (25 bp)
CGACACGAGCGCAGTGGACGACGAT
LOC_Os10g29170
Os.46399.1.A1_at--1020--831Chr10:14861674..14861698 (25 bp)
ATGGCAATGAGCTCGGAACAACCGT
LOC_Os10g29170
Os.46399.1.A1_at--5--8171Chr10:14861660..14861684 (25 bp)
GGAACAACCGTATCTGGCGACTCTA
LOC_Os10g29170
Os.46399.1.A1_at--11--1791Chr10:14861654..14861678 (25 bp)
ACCGTATCTGGCGACTCTAAGCTTG
LOC_Os10g29170
Os.46399.1.A1_at--752--5711Chr10:14861642..14861666 (25 bp)
GACTCTAAGCTTGCCCATTTGTGTG
LOC_Os10g29170
Target Sequence 
CTTCTCTATATTCGATGGCGGAGGTACAGCGACGATGACGACTCTTACCCTTCCCGTCTCCCCATCAACCTCGATGACAG
GGCTAGGCACGGAGACAGTGGCGACGGCCGTCCTTCTTTCTTCTCCTCTGCCTTAAAGCAAGAGGAGAGCGCCAGAGGAT
GGGGCGTCGTGGTAGAGGAAAGGGGTGCCAGCGCGGTTGGGGAGGTGGCAAGTGTGGTCGTGCCCGGCTGGTTCGGGCAC
GACACGAGCGCAGTGGACGACGATGGCAATGAGCTCGGAACAACCGTATCTGGCGACTCTAAGCTTGCCCATTTGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46399.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis