Browse Element(s) Details


Os.46450.1.S1_at

Description gb:AK100816.1
DB_XREF= gi:32986025
TID=Os.46450.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46450 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative basic secretory protein (OSJNBa0051D19.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023122C23, full insert sequence.
FL= gb:AK100816.1 gb:AK059607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3493010/11secretory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34884Os.24970.1.A1_at7/1110+18283762..18291710transposon protein, putative, unclassified, expressed
LOC_Os10g34890NANA10+18293402..18298410retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34896OsAffx.20230.1.S1_at10/1110+18298923..18299806hypothetical protein
LOC_Os10g34902NANA10+18301710..18302360ripening-related protein, putative
LOC_Os10g34910OsAffx.30676.2.S1_x_at11/1110+18305831..18306517secretory protein, putative
LOC_Os10g34910OsAffx.30676.1.S1_x_at3/1110+18305831..18306517secretory protein, putative
LOC_Os10g34910OsAffx.12776.1.S1_at1/1110+18305831..18306517secretory protein, putative
LOC_Os10g34920OsAffx.30676.1.S1_at11/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.1.S1_x_at10/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.2.S1_x_at2/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34930Os.46450.1.S1_at10/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34930OsAffx.30676.2.S1_x_at5/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34940Os.46577.1.S1_at9/1110+18326944..18328368expressed protein
LOC_Os10g34940Os.46657.1.A1_at1/1110+18326944..18328368expressed protein
LOC_Os10g34960OsAffx.18521.1.S1_at11/1110+18328933..18330939Ubiquitin family protein, expressed
LOC_Os10g34970OsAffx.7997.1.S1_at11/1110+18331944..18333566hypothetical protein
LOC_Os10g34980OsAffx.18522.1.S1_at11/1110+18334614..18335224hypothetical protein
LOC_Os10g34990Os.46656.1.A1_at11/1110+18336901..18337350ubiquitin fusion protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0042829biological_processdefense response to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46450.1.S1_at--374--9711NONE
TCAAGACGCAGGTGACCGGAGTGTT
NONE
Os.46450.1.S1_at--1144--1031Chr10:18311787..18311811 (25 bp)
AGGTGACCGGAGTGTTGTACCATGA
LOC_Os10g34930
Os.46450.1.S1_at--98--2651Chr10:18312002..18312026 (25 bp)
AAGCCAGGGTTCGTTGCCGACCTGA
LOC_Os10g34930
Os.46450.1.S1_at--155--10691Chr10:18312015..18312039 (25 bp)
TTGCCGACCTGAACGCTAAGCTGAA
LOC_Os10g34930
Os.46450.1.S1_at--224--1471Chr10:18312039..18312063 (25 bp)
AGAATGGGTACAACGTCGACTACTT
LOC_Os10g34930
Os.46450.1.S1_at--855--871Chr10:18312111..18312135 (25 bp)
AGGCCAAGTATGGAAACTGATGATC
LOC_Os10g34930
Os.46450.1.S1_at--668--3851Chr10:18312127..18312151 (25 bp)
CTGATGATCGATCGACGCAGAGAAT
LOC_Os10g34930
Os.46450.1.S1_at--377--5611Chr10:18312158..18312182 (25 bp)
GACAAGAGATTACCATCATTGATTG
LOC_Os10g34930
Os.46450.1.S1_at--149--9611Chr10:18312200..18312224 (25 bp)
TCATAGCTATGGAGTTTACACAATT
LOC_Os10g34930
Os.46450.1.S1_at--382--10231Chr10:18312224..18312248 (25 bp)
TATTGTATTGCTTACGGATGATAGA
LOC_Os10g34930
Os.46450.1.S1_at--276--2871Chr10:18312252..18312276 (25 bp)
AAGGGACGCTGTCTAGTTTTCAATC
LOC_Os10g34930
Target Sequence 
TCAAGACGCAGGTGACCGGAGTGTTGTACCATGAGGTGGTGCACGTGTGGCAGTGGGGGCTGCAGGATTACGGGGCGCAT
TCGTGGGTGTACGAGGGGATCGCCGACTTTGTGCGGCTGCGCGCCGGCTACCCAGCGGCTGGTTGGGTGCAGCCGGGGCA
AGGGAACAGCTGGGAGGACAGCTACTCCGTGACGGCGAGGTTCTTCGACTACTGCGACAGCGTCAAGCCAGGGTTCGTTG
CCGACCTGAACGCTAAGCTGAAGAATGGGTACAACGTCGACTACTTCGTGCAGATCACCGGGAAGACCGTGCAGCAGCTG
TGGCAGGATTACAAGGCCAAGTATGGAAACTGATGATCGATCGACGCAGAGAATGAATAAGACAAGAGATTACCATCATT
GATTGATATAGATTGTTGTAACTCATAGCTATGGAGTTTACACAATTATTGTATTGCTTACGGATGATAGAATAAAGGGA
CGCTGTCTAGTTTTCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis