Browse Element(s) Details


Os.46452.1.S1_at

Description gb:AK100609.1
DB_XREF= gi:32985818
TID=Os.46452.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46452 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative anter-specific proline-rich protein (OSJNBa0029P06.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107L07, full insert sequence.
FL= gb:AK100609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0508811/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05050OsAffx.12510.1.S1_at11/1110+2455727..2456601hypothetical protein
LOC_Os10g05069Os.46726.1.S1_x_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.6803.1.S1_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.57362.1.S1_at2/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.384.1.S1_at1/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05088Os.46452.1.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_x_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.2.S1_x_at10/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05110NANA10+2481497..2481769hypothetical protein
LOC_Os10g05120NANA10+2484961..2485675hypothetical protein
LOC_Os10g05130Os.46725.1.S1_at9/1110+2491190..2492532expressed protein
LOC_Os10g05140NANA10+2493665..2494056hypothetical protein
LOC_Os10g05150OsAffx.30289.1.S1_at11/1110+2495127..2495342hypothetical protein
LOC_Os10g05160OsAffx.20753.1.S1_at11/1110+2502113..2504631Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0008415molecular_functionacyltransferase activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46452.1.S1_at--360--9291Chr10:2480781..2480805 (25 bp)
TCCGATTTCTATAGCTAGCCACCTA
LOC_Os10g05088
Os.46452.1.S1_at--793--191Chr10:2480785..2480809 (25 bp)
ATTTCTATAGCTAGCCACCTACCTA
LOC_Os10g05088
Os.46452.1.S1_at--1019--10171Chr10:2480790..2480814 (25 bp)
TATAGCTAGCCACCTACCTACTGGC
LOC_Os10g05088
Os.46452.1.S1_at--750--3773Chr10:2480818..2480842 (25 bp)
CTCTCGATCGATCATCTAGCTAGCT
LOC_Os10g05088
Os.46452.1.S1_at--98--451Chr10:2480831..2480855 (25 bp)
ATCTAGCTAGCTTTTTTTCCTTTAT
LOC_Os10g05088
Os.46452.1.S1_at--519--211Chr10:2480887..2480911 (25 bp)
ATTTGTACACAATTTTGTATGCTAT
LOC_Os10g05088
Os.46452.1.S1_at--913--6911Chr10:2480903..2480927 (25 bp)
GTATGCTATATATTCTAGCTCTCAT
LOC_Os10g05088
Os.46452.1.S1_at--1151--10191Chr10:2480911..2480935 (25 bp)
TATATTCTAGCTCTCATCACTCCAT
LOC_Os10g05088
Os.46452.1.S1_at--185--391Chr10:2480926..2480950 (25 bp)
ATCACTCCATCTATCTATTGAGGGA
LOC_Os10g05088
Os.46452.1.S1_at--433--10451Chr10:2480943..2480967 (25 bp)
TTGAGGGAACAAGGGTATACTAATT
LOC_Os10g05088
Os.46452.1.S1_at--916--6491Chr10:2480988..2481012 (25 bp)
GATATGCATATGGAATGTTTAAACC
LOC_Os10g05088
Target Sequence 
TCCGATTTCTATAGCTAGCCACCTACCTACTGGCCGGCTCTCGATCGATCATCTAGCTAGCTTTTTTTCCTTTATTTTTC
CCTTTTTCAGCTCGCAATAATTATTTATTTGTACACAATTTTGTATGCTATATATTCTAGCTCTCATCACTCCATCTATC
TATTGAGGGAACAAGGGTATACTAATTAAGTAGGAACTAATAAACAAGATATGCATATGGAATGTTTAAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis