Browse Element(s) Details


Os.4650.1.S1_at

Description gb:D89726.1
DB_XREF= gi:2723472
GEN=DAD-1
TID=Os.4650.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4650 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) DAD-1 mRNA for defender against apoptotic death 1 protein, complete cds.
PROD=defender against apoptotic death 1 protein
FL= gb:AK063198.1 gb:D89726.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3255010/11Defender against cell death 1, putative, expressed
LOC_Os12g439501/11Associated with HOX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32520OsAffx.3979.1.S1_at11/114+19389594..19391879hypothetical protein
LOC_Os04g32530OsAffx.3980.1.S1_at8/114+19395529..19397795hypothetical protein
LOC_Os04g32540Os.49108.2.S1_x_at10/114+19404504..19408114Serine carboxypeptidase family protein, expressed
LOC_Os04g32550Os.4650.1.S1_at10/114+19410796..19413447Defender against cell death 1, putative, expressed
LOC_Os04g32560Os.37370.1.S1_at11/114+19413897..19420445ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os04g32570OsAffx.26564.1.S1_at11/114+19420993..19421784hypothetical protein
LOC_Os04g32580OsAffx.26288.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580Os.20057.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580OsAffx.24671.1.S1_s_at1/114+19423109..19425313expressed protein
LOC_Os04g32590Os.5371.1.S1_s_at11/114+19425396..19428386expressed protein
LOC_Os04g32590OsAffx.14098.1.S1_at11/114+19425396..19428386expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006916biological_processanti-apoptosis
GO:0005634cellular_componentnucleus
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4650.1.S1_at--443--5391Chr04:19411941..19411965 (25 bp)
GAAGCTTCTAATTCAGTCCCTGGGC
LOC_Os04g32550
Os.4650.1.S1_at--99--4731NONE
GCTGTTTGCCTTCGTATTCAAGTTA
NONE
Os.4650.1.S1_at--474--2911Chr04:19413061..19413084 (24 bp)
AAGGATCTTCCTCCTGAAAGGGCGT
LOC_Os04g32550
Os.4650.1.S1_at--839--2311Chr04:19413076..19413100 (25 bp)
AAAGGGCGTTTGCAGATTTCGTTCT
LOC_Os04g32550
Os.4650.1.S1_at--907--3051Chr04:19413105..19413129 (25 bp)
AATCTGGTGCTCCACTTGGTGATCA
LOC_Os04g32550
Os.4650.1.S1_at--767--8972Chr04:19413130..19413154 (25 bp)
TGAACTTCCTTGGTTGATGTCCTGC
LOC_Os04g32550
Os.4650.1.S1_at--281--6351Chr04:19413165..19413189 (25 bp)
GATCAAGGTTTTGTAGCCCCAGTTT
LOC_Os04g32550
Os.4650.1.S1_at--312--10111Chr04:19413189..19413213 (25 bp)
TATGGTCACTGGTCAGAACACCCTG
LOC_Os04g32550
Os.4650.1.S1_at--422--271Chr04:19413245..19413269 (25 bp)
ATATGATCTTTCACACTTCACCGAT
LOC_Os04g32550
Os.4650.1.S1_at--2--2271Chr04:19413291..19413315 (25 bp)
AAACTATAAGTTCTCTACCTGCCGT
LOC_Os04g32550
Os.4650.1.S1_at--1015--4111Chr04:19413317..19413341 (25 bp)
CGCTGCGGCTTATCTTTATATCTGT
LOC_Os04g32550
Target Sequence 
GAAGCTTCTAATTCAGTCCCTGGGCAAGGCTTATGCTGCCACACCAACAAATCTCAAGATCATTGACCTCTATGTGGTCT
TTGCAGTCGCCACTGCCCTTATTCAGGTTGTTTACATGGGAATAGTGGGGTCATTTCCTTTCAACTCTTTCCTTTCTGGC
GTCCTCTCATGCATAGGAACTGCAGTCCTCGCTGTTTGCCTTCGTATTCAAGTTAACAAAGATAACAAGGAATTCAAGGA
TCTTCCTCCTGAAAGGGCGTTTGCAGATTTCGTTCTGTGCAATCTGGTGCTCCACTTGGTGATCATGAACTTCCTTGGTT
GATGTCCTGCCCCTACAACTGATCAAGGTTTTGTAGCCCCAGTTTATGGTCACTGGTCAGAACACCCTGATGTTTGGGAG
TGTCATAGTATGAGATATTCATATGATCTTTCACACTTCACCGATGTAATTCGACAATTTTTCGAGAAACTATAAGTTCT
CTACCTGCCGTTCGCTGCGGCTTATCTTTATATCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis