Browse Element(s) Details


Os.46514.2.S1_x_at

Description gb:NM_196627.1
DB_XREF= gi:37534613
TID=Os.46514.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46514 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative speckle-type protein (OSJNBa0073D04.37), mRNA.
PROD=putative speckle-type protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g295026/11expressed protein
LOC_Os10g295145/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29460OsAffx.30589.1.S1_at11/1110+14973201..14973872MATH domain containing protein
LOC_Os10g29470Os.7496.1.S1_a_at11/1110+14974506..14979907mannitol dehydrogenase, putative, expressed
LOC_Os10g29470OsAffx.20940.1.S1_at1/1110+14974506..14979907mannitol dehydrogenase, putative, expressed
LOC_Os10g29490OsAffx.22848.3.S1_x_at11/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_at2/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_x_at1/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29502Os.46514.1.S1_at10/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_x_at6/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_at1/1110+14997293..15000942expressed protein
LOC_Os10g29514Os.12052.1.S1_at11/1110+15001215..15006732expressed protein
LOC_Os10g29514Os.46514.2.S1_x_at5/1110+15001215..15006732expressed protein
LOC_Os10g29514OsAffx.21636.1.S1_x_at2/1110+15001215..15006732expressed protein
LOC_Os10g29530Os.26783.1.S1_at11/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.26783.2.S1_x_at10/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.57299.1.S1_at9/1110+15008816..15011868expressed protein
LOC_Os10g29540Os.46677.1.S1_at11/1110+15012493..15021359EDR1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46514.2.S1_x_at--1154--932Chr10:15000167..15000191 (25 bp)
AGGACACTTTTCAGGTGGCATCTAC
LOC_Os10g29502
Os.46514.2.S1_x_at--85--4031Chr10:15000194..15000218 (25 bp)
CGTACTTATGTTGACAGCGCCTTTA
LOC_Os10g29502
Os.46514.2.S1_x_at--1049--791Chr10:15000258..15000282 (25 bp)
ATGGGCCTGGATTAATTTCTGGACA
LOC_Os10g29502
Os.46514.2.S1_x_at--354--8371Chr10:15000415..15000439 (25 bp)
GGCGTGTATACTTGGTTCTCCAGAC
LOC_Os10g29502
Os.46514.2.S1_x_at--1147--2771Chr10:15000488..15000828 (25 bp)
AAGAGAAGGGAGATTGCTTGCCCAC
LOC_Os10g29502
Os.46514.2.S1_x_at--296--2991Chr10:15000864..15000888 (25 bp)
AATGTGCCCATCTGCAGTTTGTTAG
LOC_Os10g29502
Os.46514.2.S1_x_at--5--10031Chr10:15000886..15001093 (25 bp)
TAGCACGATCGCGAACAGGGTCAAA
NONE
Os.46514.2.S1_x_at--44--5451Chr10:15001475..15001499 (25 bp)
GAACCCGGTGATTCTTGACCTGGAG
LOC_Os10g29514
Os.46514.2.S1_x_at--682--5831Chr10:15001491..15001515 (25 bp)
GACCTGGAGGAATCTCTACTGGCCA
LOC_Os10g29514
Os.46514.2.S1_x_at--1099--971Chr10:15001666..15001690 (25 bp)
AGGAGGTCACAATCCGGGTCAGCAA
LOC_Os10g29514
Os.46514.2.S1_x_at--336--8611Chr10:15001733..15001757 (25 bp)
TGGTGCGTCGAGTTATTATGCCCTC
LOC_Os10g29514
Target Sequence 
AGGACACTTTTCAGGTGGCATCTACGCCGTACTTATGTTGACAGCGCCTTTATGGAAAGGGTGAAGGAGATCGAAGTGAA
GAGCTCAAATGATGGGCCTGGATTAATTTCTGGACAGAGAATTATAAGCACTAGACCATTTGGAGACCTCATGGAGGACC
CACTGGCGTGTATACTTGGTTCTCCAGACAGCAACATGGAAAGCAACAAGTCTGCTGAGCACACGGGTACTATCGTGAAG
AGAAGGGAGATTGCTTGCCCACCTGCAGTTCTGGTTGAACCAATCAGGTTGCAACCTAATGTGCCCATCTGCAGTTTGTT
AGCACGATCGCGAACAGGGTCAAATTTGGAGGTGAACCCGGTGATTCTTGACCTGGAGGAATCTCTACTGGCCAAGGGGA
ACATGACGCTTGAGGAGGAGGTCACAATCCGGGTCAGCAAGATGACCGCGAGCGTGTTCAAGGTCTTCGCCACCGCGGCG
TTTGGTGCGTCGAGTTATTATGCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46514.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis