Browse Element(s) Details


Os.46531.1.S1_at

Description gb:AK067754.1
DB_XREF= gi:32977772
TID=Os.46531.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0045B21.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114M12, full insert sequence.
FL= gb:AK067754.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2745011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27400OsAffx.20350.1.S1_x_at11/1110+14118285..14118815hypothetical protein
LOC_Os10g27420OsAffx.30562.1.S1_at11/1110+14131199..14132010hypothetical protein
LOC_Os10g27430OsAffx.18423.1.S1_at11/1110+14137596..14138003expressed protein
LOC_Os10g27440NANA10+14138694..14139250hypothetical protein
LOC_Os10g27450Os.46531.1.S1_at11/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_x_at10/1110+14143348..14147376expressed protein
LOC_Os10g27450Os.46531.2.S1_at8/1110+14143348..14147376expressed protein
LOC_Os10g27460NANA10+14154640..14155194hypothetical protein
LOC_Os10g27470Os.46465.1.S1_a_at11/1110+14155700..14161690KH domain containing protein, expressed
LOC_Os10g27480Os.23344.1.S1_at11/1110+14161866..14165351expressed protein
LOC_Os10g27980Os.21193.1.S1_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27980Os.21193.2.S1_x_at11/1110+14169134..14171358Transmembrane amino acid transporter protein, expressed
LOC_Os10g27990Os.14555.1.S1_at10/1110+14171418..14174836exocyst complex component Sec15, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46531.1.S1_at--379--4631Chr10:14143892..14143916 (25 bp)
GCGATGTTTTGCTCTCATATGGTAA
LOC_Os10g27450
Os.46531.1.S1_at--348--5291Chr10:14143836..14143860 (25 bp)
GAATGTGTCATATTTTTCAGTCCAT
LOC_Os10g27450
Os.46531.1.S1_at--89--10531Chr10:14143821..14143845 (25 bp)
TTCAGTCCATTTGAACATCGCGGAT
LOC_Os10g27450
Os.46531.1.S1_at--795--531Chr10:14143805..14143829 (25 bp)
ATCGCGGATATCTTATTGCCTGTGT
LOC_Os10g27450
Os.46531.1.S1_at--6--10711Chr10:14143790..14143814 (25 bp)
TTGCCTGTGTGCGTGCGCAGTAAAT
LOC_Os10g27450
Os.46531.1.S1_at--634--7031Chr10:14143771..14143795 (25 bp)
GTAAATAGCCTATTGGGCACGTCCA
LOC_Os10g27450
Os.46531.1.S1_at--971--8411Chr10:14143745..14143769 (25 bp)
GGCCAGGGCCACTCACTAGCAAAGG
LOC_Os10g27450
Os.46531.1.S1_at--588--711Chr10:14143602..14143626 (25 bp)
ATGATGCTGTTCTGGCGATGGAAAA
LOC_Os10g27450
Os.46531.1.S1_at--31--2331Chr10:14143579..14143603 (25 bp)
AAAGTCTTCGATCTGTAGCTTCATC
LOC_Os10g27450
Os.46531.1.S1_at--385--8751Chr10:14143552..14143576 (25 bp)
TGTACAACAGAAGCTTCGCTGCATC
LOC_Os10g27450
Os.46531.1.S1_at--937--2211Chr10:14143521..14143545 (25 bp)
ACAAGCTATAGCTACCTGGTTAGGT
LOC_Os10g27450
Target Sequence 
GCGATGTTTTGCTCTCATATGGTAACTAAACTTTCAGAAACCATGAAGGATGTTTGGAATGTGTCATATTTTTCAGTCCA
TTTGAACATCGCGGATATCTTATTGCCTGTGTGCGTGCGCAGTAAATAGCCTATTGGGCACGTCCAAGGCCAGGGCCACT
CACTAGCAAAGGCAGCTTTCTGAAGATGGGAATAGCAATGGCAGCTTTCTGAAGAACTAGCTGATTCAAACTTTTGAAAG
AGGTGATATTTGGGGAATTTTCAGAAGGTACCATTCAAATTTGCTGGAGGATGATGCTGTTCTGGCGATGGAAAAAGTCT
TCGATCTGTAGCTTCATCGTTGTACAACAGAAGCTTCGCTGCATCTGCATGACAAGCTATAGCTACCTGGTTAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis