Browse Element(s) Details


Os.46573.1.S1_at

Description gb:AK063228.1
DB_XREF= gi:32973246
TID=Os.46573.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46573 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RING zinc finger protein (OSJNBb0016G17.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-F02, full insert sequence.
FL= gb:AK063228.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3031011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30260NANA10+15387735..15393887transposon protein, putative, unclassified
LOC_Os10g30270NANA10+15397056..15397712hypothetical protein
LOC_Os10g30280Os.16605.2.S1_x_at11/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30280Os.16605.1.S1_at10/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30290Os.46549.1.S1_at10/1110+15404689..15407515GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g30300OsAffx.8086.1.S1_x_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.16507.1.S1_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300OsAffx.8086.1.S1_at8/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.8779.1.S1_at1/1110+15408198..15411156expressed protein
LOC_Os10g30310Os.46573.1.S1_at11/1110+15412472..15413084Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g30320OsAffx.18463.1.S1_at11/1110+15414010..15417090La domain containing protein
LOC_Os10g30330NANA10+15422597..15423878Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_x_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30350Os.8015.1.S1_at2/1110+15438028..15443253BTB/POZ domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46573.1.S1_at--727--7491Chr10:15412523..15412547 (25 bp)
GTGGTGAGCCATGTCATGGCGCTCC
LOC_Os10g30310
Os.46573.1.S1_at--219--8471Chr10:15412839..15412863 (25 bp)
TGGCCGGGCTCGACGAGCTCCAGCT
LOC_Os10g30310
Os.46573.1.S1_at--249--9571Chr10:15412896..15412920 (25 bp)
TCTTCGTCGCCGGTTTCTAGCTTGG
LOC_Os10g30310
Os.46573.1.S1_at--451--4151Chr10:15412903..15412927 (25 bp)
CGCCGGTTTCTAGCTTGGTTAATCA
LOC_Os10g30310
Os.46573.1.S1_at--434--7891Chr10:15412919..15412943 (25 bp)
GGTTAATCAGAATCCATCCTAGCTG
LOC_Os10g30310
Os.46573.1.S1_at--369--571Chr10:15412934..15412958 (25 bp)
ATCCTAGCTGTTGCCTGCATGAGCA
LOC_Os10g30310
Os.46573.1.S1_at--341--6691Chr10:15412943..15412967 (25 bp)
GTTGCCTGCATGAGCAATTTGCTCT
LOC_Os10g30310
Os.46573.1.S1_at--328--4311Chr10:15413009..15413033 (25 bp)
CCTTTCTGCTTCCAGCTTATGAGAT
LOC_Os10g30310
Os.46573.1.S1_at--697--6312Chr10:15413031..15413055 (25 bp)
GATGAAATGGCCAATCTCTACCTGT
LOC_Os10g30310
Os.46573.1.S1_at--3--3071Chr10:15413043..15413067 (25 bp)
AATCTCTACCTGTCCTGGTGGTAGA
LOC_Os10g30310
Os.46573.1.S1_at--955--7231Chr10:15413054..15413078 (25 bp)
GTCCTGGTGGTAGAGCAAAACGGCA
LOC_Os10g30310
Target Sequence 
GTGGTGAGCCATGTCATGGCGCTCCTGTCGTCGGCGCTGTCCGGGAAGAAGGCGGCGGCGGAAGGTGACGGCGACGACGA
CGGAGGGCAGTGCCGGTGCTGGCGGGACGGCGACGGCGTCGGCGGCGGGCAGGCGGCGGCGGCGGGGTGCTGCGTGTGCA
TATCGGGGTTCAGGGACGGGGAGGAGGTGCGGCGGCTGCCGTGCGGGCACGCGTTCCACCGGGACTGCGTCGACCGGTGG
CTGGCGCTCTACTGCCGGCGGCGGACGTGCCCGCTCTGCCGCCTCCACGTCGGCGGCGCCGTGGTGGCCGCCGCCGTGGC
CGGGCTCGACGAGCTCCAGCTCGGCGACGACCTCGTCATCTGGTTCTCCTCCCTCTTCGTCGCCGGTTTCTAGCTTGGTT
AATCAGAATCCATCCTAGCTGTTGCCTGCATGAGCAATTTGCTCTTTTTTTTAAAAAAAAAGGAAAAAAAACTTTGTTGT
TTTCTCCCTTTCTGCTTCCAGCTTATGAGATGAAATGGCCAATCTCTACCTGTCCTGGTGGTAGAGCAAAACGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis