Browse Element(s) Details


Os.46581.1.S1_at

Description gb:AK062774.1
DB_XREF= gi:32972792
TID=Os.46581.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46581 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative soluble starch synthase II-1 (OSJNBb0016G17.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A06, full insert sequence.
FL= gb:AK062774.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3016211/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30140OsAffx.30603.2.S1_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.2.S1_x_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.4.S1_x_at2/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30150Os.5338.1.S1_at11/1110+15334244..15335177universal stress protein family protein, expressed
LOC_Os10g30156Os.9108.1.S1_a_at11/1110+15343797..15351682Soluble starch synthase 2-1, chloroplast precursor, putative, expressed
LOC_Os10g30162Os.46581.1.S1_at11/1110+15352142..15354201Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30170OsAffx.30604.1.S1_x_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30170OsAffx.30604.1.S1_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30180OsAffx.30605.1.S1_at10/1110+15359380..15360457Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30190OsAffx.18461.1.S1_at11/1110+15360834..15363711potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os10g30200OsAffx.8088.1.S1_at11/1110+15366285..15367061Skp1 family, dimerisation domain containing protein
LOC_Os10g30210OsAffx.30606.1.S1_at11/1110+15368898..15370644expressed protein
LOC_Os10g30220OsAffx.18462.1.S1_at11/1110+15371114..15371945hypothetical protein
LOC_Os10g30230OsAffx.6818.1.S1_at11/1110+15373624..15374238hypothetical protein
LOC_Os10g30240OsAffx.17314.1.S1_s_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class
LOC_Os10g30240OsAffx.17314.1.S1_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46581.1.S1_at--803--7591Chr10:15353956..15353980 (25 bp)
GGGACACACGGTATTTATTTCTGAG
LOC_Os10g30162
Os.46581.1.S1_at--295--10211Chr10:15353971..15353995 (25 bp)
TATTTCTGAGATGACGAGCACTGAT
LOC_Os10g30162
Os.46581.1.S1_at--298--5111Chr10:15353988..15354012 (25 bp)
GCACTGATCGATCGCGATGATGCGA
LOC_Os10g30162
Os.46581.1.S1_at--1031--4051Chr10:15354002..15354026 (25 bp)
CGATGATGCGATGGGTTTCGCTGTA
LOC_Os10g30162
Os.46581.1.S1_at--899--2651Chr10:15354078..15354102 (25 bp)
AAGCCTTGGCTTTTTCTGTTCATAT
LOC_Os10g30162
Os.46581.1.S1_at--500--10191Chr10:15354100..15354124 (25 bp)
TATATATGATCATCCATGTCGCATG
LOC_Os10g30162
Os.46581.1.S1_at--789--8711Chr10:15354116..15354140 (25 bp)
TGTCGCATGAAAGAGATGTCCCCAT
LOC_Os10g30162
Os.46581.1.S1_at--120--1311Chr10:15354129..15354153 (25 bp)
AGATGTCCCCATGCAAATCCTTGTG
LOC_Os10g30162
Os.46581.1.S1_at--12--2291Chr10:15354143..15354167 (25 bp)
AAATCCTTGTGCAGTACTATCATCT
LOC_Os10g30162
Os.46581.1.S1_at--847--7331Chr10:15354151..15354175 (25 bp)
GTGCAGTACTATCATCTGACTTTAA
LOC_Os10g30162
Os.46581.1.S1_at--809--5691Chr10:15354168..15354192 (25 bp)
GACTTTAAGTGGCTAACATGTGGGC
LOC_Os10g30162
Target Sequence 
GGGACACACGGTATTTATTTCTGAGATGACGAGCACTGATCGATCGCGATGATGCGATGGGTTTCGCTGTAAGAATTAAT
GAAATCCATCTGAATGGAAAAATGAAAATGGAAATGTAAACAAAGCCTTGGCTTTTTCTGTTCATATATATGATCATCCA
TGTCGCATGAAAGAGATGTCCCCATGCAAATCCTTGTGCAGTACTATCATCTGACTTTAAGTGGCTAACATGTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis