Browse Element(s) Details


Os.46752.1.S1_at

Description gb:AK121308.1
DB_XREF= gi:37990931
TID=Os.46752.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023112A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112A22, full insert sequence.
FL= gb:AK121308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3958011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39550Os.15749.1.S1_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39550Os.15749.1.S2_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39560Os.53306.1.S1_at11/112+23870626..23875833Protein kinase domain containing protein, expressed
LOC_Os02g39570Os.14567.1.S1_at11/112+23879738..23884873acetolactate synthase small subunit, putative, expressed
LOC_Os02g39580Os.46752.1.S1_at11/112+23885097..23887065expressed protein
LOC_Os02g39580Os.5575.1.S1_s_at11/112+23885097..23887065expressed protein
LOC_Os02g39590OsAffx.24650.2.S1_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_s_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_x_at2/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39600Os.19626.1.S1_at11/112+23888792..23892961outer envelope protein, putative, expressed
LOC_Os02g39610Os.51273.1.S1_at11/112+23894569..23895054expressed protein
LOC_Os02g39620OsAffx.2917.1.S1_s_at11/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39620OsAffx.2917.1.S1_at10/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39630Os.9122.1.S1_at11/112+23903531..23907772iron-stress related protein, putative, expressed
LOC_Os02g39640OsAffx.2918.1.S1_at10/112+23908574..23910341expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46752.1.S1_at--426--5031Chr02:23886483..23886507 (25 bp)
GCAGTCATATTATTTCTTTAAGGTG
LOC_Os02g39580
Os.46752.1.S1_at--352--11Chr02:23886525..23886549 (25 bp)
ATTTGGTACCAAGCGAAAACGTGTG
LOC_Os02g39580
Os.46752.1.S1_at--517--5251Chr02:23886580..23886604 (25 bp)
GAATCTATTACTGGTCACTGCTTGA
LOC_Os02g39580
Os.46752.1.S1_at--227--10791Chr02:23886601..23886625 (25 bp)
TTGATCTGACCTACACCATGTTGAC
LOC_Os02g39580
Os.46752.1.S1_at--986--6651Chr02:23886620..23886644 (25 bp)
GTTGACTCATTTTTGCATGCGCACG
LOC_Os02g39580
Os.46752.1.S1_at--218--4991Chr02:23886634..23886658 (25 bp)
GCATGCGCACGCACATGTGGATGTG
LOC_Os02g39580
Os.46752.1.S1_at--452--531Chr02:23886677..23886701 (25 bp)
ATCGCTTTTCTTTGTGTAGGTTCAA
LOC_Os02g39580
Os.46752.1.S1_at--703--3671Chr02:23886686..23886710 (25 bp)
CTTTGTGTAGGTTCAACTGGCCAAT
LOC_Os02g39580
Os.46752.1.S1_at--107--5251Chr02:23886774..23886798 (25 bp)
GAATAATTTGTGTTGGCCCTGATGC
LOC_Os02g39580
Os.46752.1.S1_at--681--7411Chr02:23886783..23886807 (25 bp)
GTGTTGGCCCTGATGCAGAAACATA
LOC_Os02g39580
Os.46752.1.S1_at--499--2511Chr02:23886802..23886826 (25 bp)
AACATAAGTTCTGCTTGCTCTGTCC
LOC_Os02g39580
Target Sequence 
GCAGTCATATTATTTCTTTAAGGTGAAAAAAATTGTAGTATTATTTGGTACCAAGCGAAAACGTGTGGTATAAATACATT
TTTCCGTAACTGAATTAGAATCTATTACTGGTCACTGCTTGATCTGACCTACACCATGTTGACTCATTTTTGCATGCGCA
CGCACATGTGGATGTGGTATCAACTTAATGAAACATCGCTTTTCTTTGTGTAGGTTCAACTGGCCAATGAGAAACAATTG
ATTGATCACTATGGATCAAAGCATCCCAAGGAAAAACCCCCTAGCCCATCAGAATAATTTGTGTTGGCCCTGATGCAGAA
ACATAAGTTCTGCTTGCTCTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis