Browse Element(s) Details


Os.46836.1.S1_at

Description gb:AK108607.1
DB_XREF= gi:32993816
TID=Os.46836.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46836 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transcription factor (OSJNBa0053C23.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-H05, full insert sequence.
FL= gb:AK108607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g388209/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38750OsAffx.20171.1.S1_at11/1110+20309753..20312847transposon protein, putative, Mutator sub-class
LOC_Os10g38760OsAffx.30713.1.S1_x_at9/1110+20313372..20313827hypothetical protein
LOC_Os10g38760OsAffx.30713.1.S1_at6/1110+20313372..20313827hypothetical protein
LOC_Os10g38770OsAffx.18570.1.S1_at11/1110+20314720..20315200GRF zinc finger family protein
LOC_Os10g38780Os.9101.1.S1_at11/1110+20316247..20317266glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38790OsAffx.18571.1.S1_at10/1110+20317401..20318318hypothetical protein
LOC_Os10g38800OsAffx.30714.1.S1_x_at11/1110+20322783..20325191Leucine Rich Repeat family protein, expressed
LOC_Os10g38820Os.46836.1.S1_at9/1110+20331077..20333627bZIP transcription factor family protein, expressed
LOC_Os10g38834Os.46875.1.S1_at11/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38834Os.52782.1.S1_at1/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38850OsAffx.30715.2.S1_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38850OsAffx.30715.2.S1_s_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38850Os.52167.1.S1_x_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46836.1.S1_at--660--1291Chr10:20332549..20332573 (25 bp)
AGATCCTGCAGACGGAGGCCACAAC
LOC_Os10g38820
Os.46836.1.S1_at--958--7191Chr10:20332381..20332405 (25 bp)
GTCGGGAATGGCCACGCAGAACAAC
LOC_Os10g38820
Os.46836.1.S1_at--673--3491NONE
CAGGCGCAGCTACGCGATGCATTGA
NONE
Os.46836.1.S1_at--48--3011Chr10:20331430..20331454 (25 bp)
AATGAGGTCTGCGACACGAGCTCGT
LOC_Os10g38820
Os.46836.1.S1_at--1120--7611Chr10:20331241..20331265 (25 bp)
GGGACTGCGTCTAGGTGCTCATCAG
LOC_Os10g38820
Os.46836.1.S1_at--961--1031Chr10:20331229..20331253 (25 bp)
AGGTGCTCATCAGGGCCATACAGAA
LOC_Os10g38820
Os.46836.1.S1_at--724--2611Chr10:20331155..20331179 (25 bp)
AACCCATTTGTTTTCAGCATTGATG
LOC_Os10g38820
Os.46836.1.S1_at--588--6271Chr10:20331134..20331158 (25 bp)
GATGTCTCCGTAAATTTGCTTGTGT
LOC_Os10g38820
Os.46836.1.S1_at--280--4931Chr10:20331117..20331141 (25 bp)
GCTTGTGTAACTTGTATGTCCGGGC
LOC_Os10g38820
Os.46836.1.S1_at--496--6911Chr10:20331104..20331128 (25 bp)
GTATGTCCGGGCAAACACCCAGTAA
LOC_Os10g38820
Os.46836.1.S1_at--268--10591Chr10:20331077..20331101 (25 bp)
TTCTGAATGTTCTTCGTTCTTTCAC
NONE
Target Sequence 
AGATCCTGCAGACGGAGGCCACAACCCTCTCCGCTCAGCTGACTCTTTTGCAGCGCGACTCGTCGGGAATGGCCACGCAG
AACAACGAGCTCAAGTTCAGGCTGCAGTCCATGGAGCAGCAGGCGCAGCTACGCGATGCATTGAACGAGGCACTGACAGC
TGAGGTGCAGCGCCTGAAACTCGCGGCGAATGAGGTCTGCGACACGAGCTCGTCCAGCAACCTAGCACACCAAATCCAGC
TCCGCNGTCAGAACCAGATGCTTGATCTGCACAAGCAGCAGCAGCAGCAGGTTGAGCAGATACCATTCTATCAACTGGAA
CTGCCAGAGCAGCAGAATGGCNCGGCGAGGAATCACGAGTCCAAATGATTGTTCGCGGGGACTGCGTCTAGGTGCTCATC
AGGGCCATACAGAAAAAATGTCACTAGTAGAAATTTAGACGATCTGAAGAAATTCCTTTTCCTAACCCATTTGTTTTCAG
CATTGATGTCTCCGTAAATTTGCTTGTGTAACTTGTATGTCCGGGCAAACACCCAGTAATATTCTGAATGTTCTTCGTTC
TTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46836.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis