Browse Element(s) Details


Os.46838.1.S1_at

Description gb:AK108539.1
DB_XREF= gi:32993748
TID=Os.46838.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0068A07.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-C12, full insert sequence.
FL= gb:AK108539.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2531010/11SPX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25290Os.12012.1.S1_at11/1110+12738382..12739510ZIM motif family protein, expressed
LOC_Os10g25300Os.46392.1.S1_s_at11/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.1.S1_at9/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.2.S1_x_at8/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.2.S1_s_at3/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.4648.1.S1_at1/1110+12749285..12752443expressed protein
LOC_Os10g25300OsAffx.19167.1.A1_at1/1110+12749285..12752443expressed protein
LOC_Os10g25310Os.46838.1.S1_at10/1110+12757461..12760085SPX domain containing protein, expressed
LOC_Os10g25320Os.17550.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.17550.2.S1_x_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.56122.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.22711.1.A1_at1/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25330OsAffx.30527.1.S1_at11/1110+12769577..12770105hypothetical protein
LOC_Os10g25340OsAffx.30528.1.S1_at10/1110+12773386..12777053GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25349OsAffx.7080.1.S1_x_at1/1110+12779884..12780633hypothetical protein
LOC_Os10g25360Os.11059.1.S1_at11/1110+12781352..12783830signal peptide peptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46838.1.S1_at--429--7091NONE
GTCAACTACACAGGGCTGGCCAAGA
NONE
Os.46838.1.S1_at--839--10511Chr10:12759194..12759218 (25 bp)
TTCACGACGGAGCTCATCTCGAGGC
LOC_Os10g25310
Os.46838.1.S1_at--1093--9291Chr10:12759222..12759246 (25 bp)
TCCGCGACTGCGAGGCCACCATGGA
LOC_Os10g25310
Os.46838.1.S1_at--555--6231Chr10:12759328..12759352 (25 bp)
GATGGCTCCGATGGCAGACCAGCAG
LOC_Os10g25310
Os.46838.1.S1_at--761--6371Chr10:12759489..12759513 (25 bp)
GATCCGATCCCCATCTGAAAGAGAA
LOC_Os10g25310
Os.46838.1.S1_at--62--10371Chr10:12759537..12759561 (25 bp)
TTTTTTATGCCTAATTGCCGGTACT
LOC_Os10g25310
Os.46838.1.S1_at--1017--4451Chr10:12759545..12759569 (25 bp)
GCCTAATTGCCGGTACTAGATTGTA
LOC_Os10g25310
Os.46838.1.S1_at--778--6551Chr10:12759571..12759595 (25 bp)
GATTACGAAACGAGTCATTGAGAGA
LOC_Os10g25310
Os.46838.1.S1_at--415--6811Chr10:12759616..12759640 (25 bp)
GTTTTCTGTACTTGTAAACTCACAT
LOC_Os10g25310
Os.46838.1.S1_at--226--7051Chr10:12759629..12759653 (25 bp)
GTAAACTCACATATGCCGTGGTAGA
LOC_Os10g25310
Os.46838.1.S1_at--861--591Chr10:12759641..12759665 (25 bp)
ATGCCGTGGTAGAGAACATACATAC
LOC_Os10g25310
Target Sequence 
GTCAACTACACAGGGCTGGCCAAGATCCTGAAGAAATACGACAAGCGCACCGGCCGCCTCCTCCGGCTGCCGTTCATCGA
GAAGGTGCTCCGGCAGCCGTTCTTCACGACGGAGCTCATCTCGAGGCTCGTCCGCGACTGCGAGGCCACCATGGAGGCCA
TCTTCACCTCCTCCGTGGCGACGACGGCGATGGCCGGCGATCGCCGGACATGGAAAGGATGCTCCGGCGACGCCGGGATG
GCTCCGATGGCAGACCAGCAGGGCATCTTCCGGAACACCGTCGCCGCGCTGGCGACGATGAAGGAGCTCCGGAGCGGGAG
CTCGACGTANGGGCGGTTCTCGCTGCCGCCGATGGCGGCGCCGGCCTCGCCGGAGTCCGACNGTGCTGCAGTCCATCCGA
TCCGATCCCCATCTGAAAGAGAATGGAAGAATTCCAAGTTTACAGTTTTTTTATGCCTAATTGCCGGTACTAGATTGTAT
GATTACGAAACGAGTCATTGAGAGATTAGCAATGTGCAAGCTAAAGTTTTCTGTACTTGTAAACTCACATATGCCGTGGT
AGAGAACATACATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis