Browse Element(s) Details


Os.46874.1.S1_x_at

Description gb:AK111078.1
DB_XREF= gi:32996287
TID=Os.46874.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0079H13.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-F01, full insert sequence.
FL= gb:AK111078.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1110011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os08g223804/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11060Os.46712.1.S1_x_at11/1110+5877600..5881295expressed protein
LOC_Os10g11060Os.50623.1.S1_at10/1110+5877600..5881295expressed protein
LOC_Os10g11070OsAffx.20650.1.S1_at11/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.2.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.3.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.27088.1.A1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.20650.2.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11080OsAffx.30387.1.S1_at11/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_x_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11090Os.2235.3.S1_x_at11/1110+5900922..5902664retrotransposon protein, putative, unclassified
LOC_Os10g11100Os.46874.1.S1_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.46874.1.S1_x_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.8976.1.S1_at4/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.1.S1_x_at2/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.2.S1_x_at1/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11110Os.18580.1.S1_at11/1110+5910667..5916587expressed protein
LOC_Os10g11110Os.27021.1.S1_x_at1/1110+5910667..5916587expressed protein
LOC_Os10g11110Os.53962.1.S1_at1/1110+5910667..5916587expressed protein
LOC_Os10g11120Os.38751.1.A1_at7/1110+5919334..5920860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11120Os.49802.1.S2_at1/1110+5919334..5920860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11130OsAffx.18213.1.S1_at11/1110+5931182..5932093hypothetical protein
LOC_Os10g11140Os.5319.1.S1_at10/1110+5933194..5940682Phosphoglucomutase, chloroplast precursor, putative, expressed
LOC_Os10g11140Os.56122.1.S1_at1/1110+5933194..5940682Phosphoglucomutase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46874.1.S1_x_at--180--10432Chr08:13362123..13362147 (25 bp)
TTATGGCCGTGGAGCGCAACCGTGA
LOC_Os08g22380
Os.46874.1.S1_x_at--1024--8851Chr10:5904681..5904705 (25 bp)
TGAGGCTCAAAACGCCGTCCTTCAG
LOC_Os10g11100
Os.46874.1.S1_x_at--482--4012Chr08:13362160..13362184 (25 bp)
CGTCCTTCAGCAAATCGCAGCAAGT
LOC_Os08g22380
Os.46874.1.S1_x_at--684--3031Chr10:5904654..5904678 (25 bp)
AATCGCAGCAAGTGTAGCCGCTACC
LOC_Os10g11100
Os.46874.1.S1_x_at--468--4792Chr08:13362291..13362315 (25 bp)
GCTCCGATGATCCACTTGATGCTGA
LOC_Os08g22380
Os.46874.1.S1_x_at--660--8872Chr08:13362313..13362337 (25 bp)
TGATGATTGGCTTCGCACCATCGAG
LOC_Os08g22380
Os.46874.1.S1_x_at--284--4451Chr10:5904390..5904414 (25 bp)
GCCTTGCACTGTCGGCCTCGCAGAG
LOC_Os10g11100
Os.46874.1.S1_x_at--1086--8311Chr10:5904310..5904334 (25 bp)
GGCTGATGTGGCCATGCTGATATTT
LOC_Os10g11100
Os.46874.1.S1_x_at--431--3531Chr10:5904298..5904322 (25 bp)
CATGCTGATATTTTGGTCCCACGTT
LOC_Os10g11100
Os.46874.1.S1_x_at--894--6651Chr10:5904276..5904300 (25 bp)
GTTGACTCAGCGACCACGTTAGATA
LOC_Os10g11100
Os.46874.1.S1_x_at--1067--131Chr10:5904218..5904242 (25 bp)
AGAACGGTTTTATAAGTCAAGTGAT
LOC_Os10g11100
Target Sequence 
TTATGGCCGTGGAGCGCAACCGTGAGGCTCAAAACGCCGTCCTTCAGCAAATCGCAGCAAGTGTAGCCGCTACCGCTGCC
CACATTGCCCAAGGTGCGGGCGGTGGTGGACACCATGCCACCGGGGGACTCGCTGNNTTTCAGCGTACTCAACCTCCGGT
GTTCACTCGCTCCGATGATCCACTTGATGCTGATGATTGGCTTCGCACCATCGAGCGGAAGCTCACATCCTCCCCCTACC
GCCCGCCCGCAGCTCCTCCCCCTACCGCCGCCGCGTCATCCATCGCCGACTGCCGACGCCCTCCTCCTCTCCCGCCTTGC
ACTGTCGGCCTCGCAGAGAAGGGAAAGAGCGAGAGAGATGAGGAAGGGAGAGAAGAGGGGAAAAGAGAGAGGAGGCTGAT
GTGGCCATGCTGATATTTTGGTCCCACGTTGACTCAGCGACCACGTTAGATAAAACCGGGGTCAAAACCACCGAAGAATC
TGAAGAGAACGGTTTTATAAGTCAAGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46874.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis