Browse Element(s) Details


Os.46878.1.S1_at

Description gb:AK106239.1
DB_XREF= gi:32991448
TID=Os.46878.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46878 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Scl1 protein (OSJNBa0015J15.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-C09, full insert sequence.
FL= gb:AK106239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4039011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40324OsAffx.30734.1.S1_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_x_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324Os.46515.1.S1_at1/1110+21271909..21283297hypothetical protein
LOC_Os10g40350OsAffx.7920.1.S1_at11/1110+21285192..21286250expressed protein
LOC_Os10g40360Os.2881.1.S1_at10/1110+21288526..21290890Proline dehydrogenase family protein, expressed
LOC_Os10g40370Os.31837.2.S1_x_at11/1110+21293934..21295071expressed protein
LOC_Os10g40370Os.31837.1.A1_at11/1110+21293934..21295071expressed protein
LOC_Os10g40390Os.46878.1.S1_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40390Os.46878.2.S1_x_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40400OsAffx.7919.1.S1_at7/1110+21315179..21319698retrotransposon protein, putative, unclassified
LOC_Os10g40410Os.6910.1.S1_at10/1110+21322347..21325319expressed protein
LOC_Os10g40420Os.26482.1.S1_at11/1110+21325706..21326566Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40430Os.4194.1.S1_at11/1110+21328407..21329181Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46878.1.S1_at--727--8551Chr10:21305912..21305936 (25 bp)
TGGAGGTGCTAGAAAGCCCTCGCCG
LOC_Os10g40390
Os.46878.1.S1_at--777--4111Chr10:21305864..21305888 (25 bp)
CGCAGCCGTGGAGCCGACGTATCAA
LOC_Os10g40390
Os.46878.1.S1_at--695--5731Chr10:21305849..21305873 (25 bp)
GACGTATCAAGGAGCCGCGGATTTT
LOC_Os10g40390
Os.46878.1.S1_at--359--8131Chr10:21305818..21305842 (25 bp)
GGACTAATGATCCTGCTACTTCTTC
LOC_Os10g40390
Os.46878.1.S1_at--1160--3871Chr10:21305710..21305734 (25 bp)
CTGTAATGATCTCAGCTGAGCTGAT
LOC_Os10g40390
Os.46878.1.S1_at--4--7391Chr10:21305683..21305707 (25 bp)
GTGAGCTGAGTGTCCTAAGATTGTC
LOC_Os10g40390
Os.46878.1.S1_at--422--9791Chr10:21305668..21305692 (25 bp)
TAAGATTGTCGTGTCACCTTGCAGC
LOC_Os10g40390
Os.46878.1.S1_at--558--3431Chr10:21305610..21305634 (25 bp)
CAGAGTGCCATGTCGCAATGGTGTT
LOC_Os10g40390
Os.46878.1.S1_at--980--6991Chr10:21305585..21305609 (25 bp)
GTACTGGTACAGTAGCTGGCGCATT
LOC_Os10g40390
Os.46878.1.S1_at--1018--9991Chr10:21305573..21305597 (25 bp)
TAGCTGGCGCATTCTACTTCACCAT
LOC_Os10g40390
Os.46878.1.S1_at--856--10471Chr10:21305524..21305548 (25 bp)
TTACTACTCGATTCCCCGTGAAAAT
LOC_Os10g40390
Target Sequence 
TGGAGGTGCTAGAAAGCCCTCGCCGCCGTCGCCGTCTCCGGCGAGCGGCGCAGCCGTGGAGCCGACGTATCAAGGAGCCG
CGGATTTTAGTTAGGGACTAATGATCCTGCTACTTCTTCCTCTCCAAGTGAAAGTCAAGTGTTTTTTTACCCTTTTTGTG
TAACTTTTTTTTACTCCTTTTTTCTTCTTCTTCTTTGTGTTGCTGTAATGATCTCAGCTGAGCTGATCAGTGAGCTGAGT
GTCCTAAGATTGTCGTGTCACCTTGCAGCTTGGCTCTGCTTCTGCTTCTGCTTGTGCAGATGCAGAGTGCCATGTCGCAA
TGGTGTTGTACTGGTACAGTAGCTGGCGCATTCTACTTCACCATCATCCATCCATCCATCCCCCTGTGTTACTACTCGAT
TCCCCGTGAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis