Browse Element(s) Details


Os.47322.1.A1_at

Description gb:AK108636.1
DB_XREF= gi:32993845
TID=Os.47322.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-G06, full insert sequence.
FL= gb:AK108636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3038011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30330Os.51728.1.S1_at11/119+18463264..18468033CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g30340Os.12127.2.S1_x_at7/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30340Os.12127.1.S1_at6/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30350Os.19234.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30350Os.22948.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30360Os.4830.1.S1_at11/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30360Os.4830.1.S1_x_at10/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30370Os.35344.18.S1_x_at11/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370Os.35344.3.S1_x_at9/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370OsAffx.22940.5.S1_x_at3/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30380Os.47322.1.A1_at11/119+18490725..18493878expressed protein
LOC_Os09g30390OsAffx.6452.1.S1_at11/119+18494825..18495403hypothetical protein
LOC_Os09g30400Os.20028.1.S1_at11/119+18495951..18500217WRKY DNA binding domain containing protein, expressed
LOC_Os09g30410Os.51374.1.S1_at10/119+18507898..18509774expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47322.1.A1_at--712--5911Chr09:18493374..18493398 (25 bp)
GAGCTTCTTAAGGTGTGCACCAACA
LOC_Os09g30380
Os.47322.1.A1_at--113--1471Chr09:18493414..18493438 (25 bp)
AGAAGTCGCTCGCATCGCGGATACA
LOC_Os09g30380
Os.47322.1.A1_at--87--9051Chr09:18493477..18493501 (25 bp)
TGCAGACGAACAGCCATGCCGATGA
LOC_Os09g30380
Os.47322.1.A1_at--432--6071Chr09:18493500..18493524 (25 bp)
GAGTTCATCTGGCAAGAGGTGACAC
LOC_Os09g30380
Os.47322.1.A1_at--801--7751Chr09:18493517..18493541 (25 bp)
GGTGACACTGCTCAAGGCAACGCTG
LOC_Os09g30380
Os.47322.1.A1_at--969--8071Chr09:18493595..18493619 (25 bp)
GGAGCTCTGTAGAACCTGCATCAGC
LOC_Os09g30380
Os.47322.1.A1_at--19--631Chr09:18493632..18493656 (25 bp)
ATGCTTGGGCATGACCATTCCCAGA
LOC_Os09g30380
Os.47322.1.A1_at--1015--91Chr09:18493648..18493672 (25 bp)
ATTCCCAGACACTGGCTGCTCAGGA
LOC_Os09g30380
Os.47322.1.A1_at--34--7871Chr09:18493752..18493776 (25 bp)
GGTATAATTCACGACACATTCTGTT
LOC_Os09g30380
Os.47322.1.A1_at--217--3611Chr09:18493827..18493851 (25 bp)
CATTGATCTGTACAGTTGTGCTCTT
LOC_Os09g30380
Os.47322.1.A1_at--800--7311Chr09:18493844..18493868 (25 bp)
GTGCTCTTTGTATTCCACTACTGAT
LOC_Os09g30380
Target Sequence 
GAGCTTCTTAAGGTGTGCACCAACATCNTCGAGNACGCAGAGAAGTCGCTCGCATCGCGGATACAGGACTTGAAGCAGGG
GCCATTGTGCTGGAAGAAGAAGCTGCAGACGAACAGCCATGCCGATGAGTTCATCTGGCAAGAGGTGACACTGCTCAAGG
CAACGCTGCTCGAGACAAGGGCGAAGCTGCTGATGCGAGGCGGGTTATTCGACAGCGGCGAGGAGCTCTGTAGAACCTGC
ATCAGCATCAGGACTGTCATGCTTGGGCATGACCATTCCCAGACACTGGCTGCTCAGGAGACATTGGCAAAGCTGGTTAG
ATACAGGAGTAAAATCTGAAACAANGCGAAAACCTTTCAGACTTCAGAGTTGAATGGTGGTATAATTCACGACACATTCT
GTTGTGGGATCTAAAGAGTAGCGAGTTTTTTGAGATCATATGTAACTTGACTACATTGATCTGTACAGTTGTGCTCTTTG
TATTCCACTACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47322.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis