Browse Element(s) Details


Os.47350.1.S1_at

Description gb:AK067821.1
DB_XREF= gi:32977839
TID=Os.47350.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119M08, full insert sequence.
FL= gb:AK059021.1 gb:AK067821.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3920010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39160OsAffx.30200.1.S1_at10/119+22487767..22489686Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.30202.1.S1_x_at11/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.30201.1.S1_at11/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170Os.51754.1.S1_at1/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.6233.1.S1_at1/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39180Os.47913.1.A1_at10/119+22504524..2250704528 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os09g39190OsAffx.30204.1.S1_at11/119+22507726..22512808Copine family protein, expressed
LOC_Os09g39200Os.47350.1.S1_at10/119+22513028..22516720expressed protein
LOC_Os09g39210Os.19603.1.S1_at11/119+22526772..22535007expressed protein
LOC_Os09g39210OsAffx.6530.1.S1_x_at11/119+22526772..22535007expressed protein
LOC_Os09g39220Os.26848.1.S1_at4/119+22536159..22540085Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os09g39230OsAffx.29486.5.S1_s_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.52330.1.S1_at11/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230OsAffx.29486.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed
LOC_Os09g39230Os.36927.2.S1_x_at6/119+22541714..22543384prephenate dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47350.1.S1_at--194--6851NONE
GTTTGAAACTCAGCTATCTTCCCTA
NONE
Os.47350.1.S1_at--697--6751Chr09:22513517..22513541 (25 bp)
GTTCAAGGAAGAGACAGCGGCTGCA
LOC_Os09g39200
Os.47350.1.S1_at--1158--251Chr09:22513446..22513470 (25 bp)
ATATGAGATCAACCAGGCTGCGAGA
LOC_Os09g39200
Os.47350.1.S1_at--853--10071Chr09:22513403..22513427 (25 bp)
TAGGCAGCTCGAAGAATCAGACAAC
LOC_Os09g39200
Os.47350.1.S1_at--731--5611Chr09:22513384..22513408 (25 bp)
GACAACAGAAGGGACTCGAGCAATC
LOC_Os09g39200
Os.47350.1.S1_at--715--9371Chr09:22513369..22513393 (25 bp)
TCGAGCAATCGCAACGGGCATAGGT
LOC_Os09g39200
Os.47350.1.S1_at--338--1011Chr09:22513348..22513372 (25 bp)
AGGTATATGTGCTGGCCATGGCAAT
LOC_Os09g39200
Os.47350.1.S1_at--929--8971Chr09:22513314..22513338 (25 bp)
TGAACTATGTGCGATTGCCACCGAC
LOC_Os09g39200
Os.47350.1.S1_at--160--931Chr09:22513287..22513311 (25 bp)
AGGCAGATCAAACCTCCAACGAGAT
LOC_Os09g39200
Os.47350.1.S1_at--320--6031Chr09:22513267..22513291 (25 bp)
GAGATGGAGCTATCTGAACCTCTGA
LOC_Os09g39200
Os.47350.1.S1_at--988--5431Chr09:22513252..22513276 (25 bp)
GAACCTCTGATATAGTTGTGCCATA
LOC_Os09g39200
Target Sequence 
GTTTGAAACTCAGCTATCTTCCCTAAACAAGGAATTAGACGAAGCTAAACAGGCAATGCTGGAGNTAGAGANCAAACTGA
AGTTCAAGGAAGAGACAGCGGCTGCAGCAATGGCGGCACGTGATGCCGCAGAGAAATCATTGAAACTAGCGGATATGAGA
TCAACCAGGCTGCGAGAGAGACTGGAAGAGATCAATAGGCAGCTCGAAGAATCAGACAACAGAAGGGACTCGAGCAATCG
CAACGGGCATAGGTATATGTGCTGGCCATGGCAATGGTTGGGGCTGAACTATGTGCGATTGCCACCGACAGAGGCAGATC
AAACCTCCAACGAGATGGAGCTATCTGAACCTCTGATATAGTTGTGCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis