Browse Element(s) Details


Os.47351.1.S1_at

Description gb:AK067067.1
DB_XREF= gi:32977085
TID=Os.47351.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093L19, full insert sequence.
FL= gb:AK067067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g548601/1160S ribosomal protein L13a-2, putative
LOC_Os03g548901/1160S ribosomal protein L13a-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54804OsAffx.19542.3.S1_x_at6/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed
LOC_Os03g54804OsAffx.13489.1.S1_at1/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed
LOC_Os03g54820NANA3+31104635..31105630hypothetical protein
LOC_Os03g54830OsAffx.3607.1.S1_at11/113+31107498..31107959hypothetical protein
LOC_Os03g54840OsAffx.25713.1.S1_at11/113+31112335..31113841hypothetical protein
LOC_Os03g54850OsAffx.25714.1.S1_at11/113+31115593..31117971expressed protein
LOC_Os03g54850OsAffx.25714.2.S1_s_at1/113+31115593..31117971expressed protein
LOC_Os03g54860Os.47351.1.S1_at1/113+31127718..3112950260S ribosomal protein L13a-2, putative
LOC_Os03g54870OsAffx.25714.2.S1_s_at11/113+31130796..31133330expressed protein
LOC_Os03g54870OsAffx.25714.1.S1_at11/113+31130796..31133330expressed protein
LOC_Os03g54880Os.37742.1.S1_at6/113+31136383..31136978ATP-binding cassette sub-family B member 8, mitochondrial precursor, putative
LOC_Os03g54890Os.12202.1.S1_at11/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54890Os.47351.1.S1_at1/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54900Os.46774.1.S1_at11/113+31146033..31151362Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47351.1.S1_at--496--8871Chr07:3672173..3672197 (25 bp)
TGATGAGGCATTGAGTCCCATCTGA
NONE
Os.47351.1.S1_at--1047--113Chr07:3672203..3672227 (25 bp)
ATTAACCACCAAGATCTCTGAGGCC
NONE
Os.47351.1.S1_at--217--3631Chr07:3672227..3672251 (25 bp)
CTTGTTCTAGCCGTCACTGTTTATT
NONE
Os.47351.1.S1_at--399--1971Chr07:3672242..3672266 (25 bp)
ACTGTTTATTTCGAGCTTTCTGCTT
NONE
Os.47351.1.S1_at--347--8951Chr07:3672276..3672300 (25 bp)
TGACTTTTGTGTGTGCAAGCCGCAT
NONE
Os.47351.1.S1_at--338--2931Chr07:3672314..3672338 (25 bp)
AAGGCAGGGCAATTCAGTTCAGTAC
NONE
Os.47351.1.S1_at--129--4851Chr07:3672341..3672365 (25 bp)
GCTAAACTGCAAACGTGCTCTGTTA
NONE
Os.47351.1.S1_at--249--5211Chr07:3672375..3672399 (25 bp)
GAATTGCTCGTATGATCATGCGTTA
NONE
Os.47351.1.S1_at--445--5251Chr07:3672507..3672531 (25 bp)
GAATCTCTCTGATTGTGCCATGAGC
NONE
Os.47351.1.S1_at--128--8711Chr07:3672520..3672544 (25 bp)
TGTGCCATGAGCTCAGGATGCATCT
NONE
Os.47351.1.S1_at--583--10811Chr07:3672656..3672680 (25 bp)
TTGTGTCTTAACTCTTAACCGTGTA
NONE
Target Sequence 
TGATGAGGCATTGAGTCCCATCTGATGATCATTAACCACCAAGATCTCTGAGGCCTTGTTCTAGCCGTCACTGTTTATTT
CGAGCTTTCTGCTTCTCTGGTTTTGACTTTTGTGTGTGCAAGCCGCATAACATAAACTTGGAAGGCAGGGCAATTCAGTT
CAGTACTAGCTAAACTGCAAACGTGCTCTGTTAAAAATGATAGAATTGCTCGTATGATCATGCGTTATAGTTGACTTTAC
TATTATAATAAACTGAAATGTACTATCCAATTATGAACAGCAAATGAACAAATATCAAGTAACTCTCAATGTGTAATTGT
GCAACGTTAGATATGAATCTCTCTGATTGTGCCATGAGCTCAGGATGCATCTGGGCATGGAAGAATGAACAGTTGCTGAC
AGTATGCACAAGACATGGCATCCCCTAGGACCTAGGGGGCATTGGAGGACTGAACTTTGGGTTCAATACCAAGATGCAAA
TTCTTGTGTCTTAACTCTTAACCGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis