Browse Element(s) Details


Os.47366.1.A1_x_at

Description gb:BX898258
DB_XREF= gi:40487022
DB_XREF=BX898258
CLONE=p852g08p3
TID=Os.47366.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47366 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1181011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11750Os.6097.2.S1_x_at1/111+6358328..6360259GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11760OsAffx.22107.1.S1_x_at11/111+6361865..6363859GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11760OsAffx.22107.2.S1_x_at6/111+6361865..6363859GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11770NANA1+6364840..6365319hypothetical protein
LOC_Os01g11780OsAffx.11013.2.S1_s_at11/111+6366221..6366868hypothetical protein
LOC_Os01g11790OsAffx.22107.4.S1_at11/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11790OsAffx.22107.2.S1_x_at10/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11790OsAffx.22107.1.S1_x_at6/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11800OsAffx.23206.1.S1_x_at11/111+6379683..6380489hypothetical protein
LOC_Os01g11800OsAffx.26758.1.S1_x_at2/111+6379683..6380489hypothetical protein
LOC_Os01g11810Os.47366.1.A1_x_at11/111+6384493..6388269expressed protein
LOC_Os01g11810Os.3875.1.S1_at10/111+6384493..6388269expressed protein
LOC_Os01g11820OsAffx.9915.1.S1_x_at11/111+6391072..6392469expressed protein
LOC_Os01g11820OsAffx.9915.1.S1_at11/111+6391072..6392469expressed protein
LOC_Os01g11820Os.53712.1.S1_x_at11/111+6391072..6392469expressed protein
LOC_Os01g11820Os.49834.1.S1_at1/111+6391072..6392469expressed protein
LOC_Os01g11830NANA1+6392952..6394096Papain family cysteine protease containing protein, expressed
LOC_Os01g11840Os.8360.1.S1_at1/111+6397692..6398868Papain family cysteine protease containing protein
LOC_Os01g11850OsAffx.25632.1.S1_at4/111+6399795..6407674hypothetical protein
LOC_Os01g11860Os.681.2.S1_x_at11/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860Os.681.1.S1_x_at10/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860Os.681.1.S1_at10/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860OsAffx.25487.1.S1_at1/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860OsAffx.32054.1.S1_at1/111+6409588..6416669DJ-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47366.1.A1_x_at--1018--1911Chr01:6385572..6385596 (25 bp)
ACGGAGGCGTTCAGCAAGGCGCTCA
LOC_Os01g11810
Os.47366.1.A1_x_at--661--2951Chr01:6385557..6385581 (25 bp)
AAGGCGCTCAACACCTGGGCTAGAT
LOC_Os01g11810
Os.47366.1.A1_x_at--806--8631Chr01:6385542..6385566 (25 bp)
TGGGCTAGATGGGTCGACGCCAACC
LOC_Os01g11810
Os.47366.1.A1_x_at--1156--2471Chr01:6385506..6385530 (25 bp)
AACACCAGAGTCTTCTTCCAGGGCA
LOC_Os01g11810
Os.47366.1.A1_x_at--519--2651Chr01:6384948..6384972 (25 bp)
AAGCCGGTGTACCTGCTGGACTTCA
LOC_Os01g11810
Os.47366.1.A1_x_at--836--9671Chr01:6384926..6384950 (25 bp)
TCACCTACCTGTCGCAGCTGAGGAA
LOC_Os01g11810
Os.47366.1.A1_x_at--692--1611Chr01:6384911..6384935 (25 bp)
AGCTGAGGAAGGACGCGCACCCGAC
LOC_Os01g11810
Os.47366.1.A1_x_at--774--5851Chr01:6384889..6384913 (25 bp)
GACCAAGTACAACGGCGGCATCTTC
LOC_Os01g11810
Os.47366.1.A1_x_at--727--2571Chr01:6384879..6384903 (25 bp)
AACGGCGGCATCTTCGGCGACGACT
LOC_Os01g11810
Os.47366.1.A1_x_at--69--8891Chr01:6384780..6384804 (25 bp)
TGATGGCCGGCTGCTGACCTGCTGT
LOC_Os01g11810
Os.47366.1.A1_x_at--513--5831Chr01:6384765..6384789 (25 bp)
GACCTGCTGTCATCACGGCCGGTGA
LOC_Os01g11810
Target Sequence 
ACGGAGGCGTTCAGCAAGGCGCTCAACACCTGGGCTAGATGGGTCGACGCCAACCTCCTCCAGACCAACACCAGAGTCTT
CTTCCAGGGCATCTCCCCCTCTCACTACAGGGGCCAAGATTGGGGCGACACGGCGAGTGCGACGTGCATGGGGCAGACGC
GGCCGGTGAACGGCACGGCGTACCCCGGGGGGCCGATCCCGCAGCAGGCGGTGCTGAGGAGCGCCCTCGCCGGCATGGCG
AAGCCGGTGTACCTGCTGGACTTCACCTACCTGTCGCAGCTGAGGAAGGACGCGCACCCGACCAAGTACAACGGCGGCAT
CTTCGGCGACGACTGCACCCACTGGTGCGTCGCCGGCCTCCCGGANACCTGGAACGTCCTCTTCTACGCCGCGCTCACCG
GCCAGCACTGATGGCCGGCTGCTGACCTGCTGTCATCACGGCCGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47366.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis