Browse Element(s) Details


Os.47370.1.S1_s_at

Description gb:BX900653
DB_XREF= gi:40493212
DB_XREF=BX900653
CLONE=y736b03p5
TID=Os.47370.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0039C14.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g316307/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31590NANA10+16222075..16228185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31600OsAffx.21897.5.S1_x_at4/1110+16228502..16231423retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31610OsAffx.26607.1.S1_at9/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.31510.1.S1_at3/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.27681.1.S1_at3/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.27681.1.S1_x_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.1755.1.S1_x_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.1755.1.S1_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.24206.1.S1_at1/1110+16233306..16237009hypothetical protein
LOC_Os10g31620OsAffx.30628.1.S1_at11/1110+16237809..16238372expressed protein
LOC_Os10g31630Os.47370.1.S1_at11/1110+16245957..16248353expressed protein
LOC_Os10g31630Os.47370.1.S1_s_at7/1110+16245957..16248353expressed protein
LOC_Os10g31640Os.10013.1.S1_at10/1110+16252113..16252959expressed protein
LOC_Os10g31650NANA10+16260908..16261747glycosyl transferase family 8 protein, putative
LOC_Os10g31660Os.11337.1.S1_at11/1110+16262909..16263701expressed protein
LOC_Os10g31670Os.46476.1.S1_at11/1110+16270116..16270931expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47370.1.S1_s_at--457--9531Chr10:16246275..16246299 (25 bp)
TCAGGATGGTGGATCCGGAAACGGC
LOC_Os10g31630
Os.47370.1.S1_s_at--582--6411Chr10:16246240..16246264 (25 bp)
GATCTGCTTCTGGAGCTGGGGAAAA
LOC_Os10g31630
Os.47370.1.S1_s_at--96--7631Chr10:16246222..16246246 (25 bp)
GGGAAAATATTGATACTGTATCCAC
LOC_Os10g31630
Os.47370.1.S1_s_at--1158--6351Chr10:16246186..16246210 (25 bp)
GATCCACTAGCGCTGCTGGTAATGG
LOC_Os10g31630
Os.47370.1.S1_s_at--1070--9211Chr10:16246184..16246208 (25 bp)
TCCACTAGCGCTGCTGGTAATGGTG
LOC_Os10g31630
Os.47370.1.S1_s_at--907--8491Chr10:16246098..16246122 (25 bp)
TGGCACCGGATCAGGTTCTGGTATG
LOC_Os10g31630
Os.47370.1.S1_s_at--1124--3351Chr10:16246095..16246119 (25 bp)
CACCGGATCAGGTTCTGGTATGGCT
LOC_Os10g31630
Os.47370.1.S1_s_at--132--10031NONE
TAGAATTTCGATTAGATGACCGATG
NONE
Os.47370.1.S1_s_at--1045--10431NONE
TTAGATGACCGATGATGTGGAGGAT
NONE
Os.47370.1.S1_s_at--676--7111Chr10:16245884..16245908 (25 bp)
GTCAGTGTCATAAGCTGATGTATGA
NONE
Os.47370.1.S1_s_at--779--5591Chr10:16245851..16245885 (25 bp)
GAAATTTGTACTTATGCATCAGTAA
NONE
Target Sequence 
TCAGGATGGTGGATCCGGAAACGGCGCGGGTGGCGGATCTGCTTCTGGAGCTGGGGAAAATATTGATACTGTATCCACTG
GTTATGGTGGATCCACTAGCGCTGCTGGTAATGGTGGCGGTGGTGGAGGAGGACAAGCCGGGGGTTCGTATGGATCTTAC
GGTCAAGGAGGTGGTGNTGGCACCGGATCAGGTTCTGGTATGGCTNACACNNATNTGTTTGNNCCAATAANTGAGGCAGA
AGGAAATGCNAANGGAAATGGTGGTGGTAATGGTACTGGGCAAAATGGTGGGAATGGTANCGGTGGAGGTGGTGGATCTG
GGTATGCNAAAGCNCATCCATAGAATTTCGATTAGATGACCGATGATGTGGAGGATGTTGGCTAAGTCAGTGTCATAAGC
TGATGTATGAAATTTGTACTTATGCATCAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47370.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis