Browse Element(s) Details


Os.47405.1.A1_s_at

Description gb:BX897790
DB_XREF= gi:40486088
DB_XREF=BX897790
CLONE=p412h01p3
TID=Os.47405.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47405 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3053011/1140S ribosomal protein S4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30500OsAffx.14888.1.S1_at11/115+17589788..17590596expressed protein
LOC_Os05g30510OsAffx.4475.1.S1_at6/115+17599508..17600668expressed protein
LOC_Os05g30520NANA5+17605072..17606172retrotransposon protein, putative, unclassified
LOC_Os05g30530Os.8428.1.S1_at11/115+17612112..1761479840S ribosomal protein S4, putative, expressed
LOC_Os05g30530Os.47405.1.A1_s_at11/115+17612112..1761479840S ribosomal protein S4, putative, expressed
LOC_Os05g30530Os.40563.1.S1_x_at1/115+17612112..1761479840S ribosomal protein S4, putative, expressed
LOC_Os05g30540Os.47130.4.A1_x_at4/115+17617793..17619303retrotransposon protein, putative, unclassified
LOC_Os05g30540OsAffx.28164.2.S1_at1/115+17617793..17619303retrotransposon protein, putative, unclassified
LOC_Os05g30550Os.28943.1.S1_x_at4/115+17620169..17623346retrotransposon protein, putative, unclassified
LOC_Os05g30560OsAffx.10711.1.S1_x_at2/115+17624022..17626922retrotransposon protein, putative, unclassified
LOC_Os05g30560Os.27544.1.A1_at1/115+17624022..17626922retrotransposon protein, putative, unclassified
LOC_Os05g30560OsAffx.10711.1.S1_at1/115+17624022..17626922retrotransposon protein, putative, unclassified
LOC_Os05g30570Os.50845.1.S1_at11/115+17633492..17635002heavy metal-associated domain containing protein, expressed
LOC_Os05g30580Os.52085.1.S1_at11/115+17639694..17642149Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47405.1.A1_s_at--862--6431Chr05:17614596..17614620 (25 bp)
GATCATATGTCCATTGGAGACCGTC
LOC_Os05g30530
Os.47405.1.A1_s_at--301--9891Chr05:17614601..17614625 (25 bp)
TATGTCCATTGGAGACCGTCAATTG
LOC_Os05g30530
Os.47405.1.A1_s_at--1017--10851Chr05:17614609..17614633 (25 bp)
TTGGAGACCGTCAATTGGCGCTTCA
LOC_Os05g30530
Os.47405.1.A1_s_at--385--1391Chr05:17614613..17614637 (25 bp)
AGACCGTCAATTGGCGCTTCATTGT
LOC_Os05g30530
Os.47405.1.A1_s_at--939--7071Chr05:17614618..17614642 (25 bp)
GTCAATTGGCGCTTCATTGTTCGAT
LOC_Os05g30530
Os.47405.1.A1_s_at--334--3171Chr05:17614621..17614645 (25 bp)
AATTGGCGCTTCATTGTTCGATACT
LOC_Os05g30530
Os.47405.1.A1_s_at--606--8391Chr05:17614625..17614649 (25 bp)
GGCGCTTCATTGTTCGATACTTGTC
LOC_Os05g30530
Os.47405.1.A1_s_at--1078--31Chr05:17614633..17614657 (25 bp)
ATTGTTCGATACTTGTCGAGCTGTT
LOC_Os05g30530
Os.47405.1.A1_s_at--923--6471Chr05:17614640..17614664 (25 bp)
GATACTTGTCGAGCTGTTTTGAAAC
LOC_Os05g30530
Os.47405.1.A1_s_at--569--2051Chr05:17614643..17614667 (25 bp)
ACTTGTCGAGCTGTTTTGAAACTAT
LOC_Os05g30530
Os.47405.1.A1_s_at--178--5551Chr05:17614660..17614684 (25 bp)
GAAACTATGAATTCATCATCTGTTA
LOC_Os05g30530
Target Sequence 
GATCATATGTCCATTGGAGACCGTCAATTGGCGCTTCATTGTTCGATACTTGTCGAGCTGTTTTGAAACTATGAATTCAT
CATCTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47405.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis