Browse Element(s) Details


Os.47745.1.S1_at

Description gb:AK069508.1
DB_XREF= gi:32979532
TID=Os.47745.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020L23, full insert sequence.
FL= gb:AK069508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0930011/11amino acid permease I, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09270Os.18192.1.S1_at11/1112+4856910..4858742bZIP family transcription factor, putative, expressed
LOC_Os12g09270OsAffx.19572.1.S1_at10/1112+4856910..4858742bZIP family transcription factor, putative, expressed
LOC_Os12g09280Os.7628.1.S1_at10/1112+4859233..4862090RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed
LOC_Os12g09290Os.5668.2.S1_at11/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.5668.2.S1_x_at11/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.5668.1.S1_at10/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09290Os.50231.1.S1_x_at3/1112+4862261..4873873tRNA pseudouridine synthase family protein, putative, expressed
LOC_Os12g09300Os.47745.1.S1_at11/1112+4880023..4883861amino acid permease I, putative, expressed
LOC_Os12g09310OsAffx.7535.1.S1_at11/1112+4889982..4890461hypothetical protein
LOC_Os12g09320OsAffx.7536.1.S1_at11/1112+4892122..4893528amino acid carrier, putative
LOC_Os12g09330OsAffx.10071.1.S1_at5/1112+4894827..4896151transposon protein, putative, Mariner sub-class
LOC_Os12g09340OsAffx.31659.2.S1_at11/1112+4896621..4897088hypothetical protein
LOC_Os12g09340OsAffx.31659.1.S1_s_at11/1112+4896621..4897088hypothetical protein
LOC_Os12g09350Os.52242.1.S1_at1/1112+4903456..4906785transposon protein, putative, Mariner sub-class
LOC_Os12g09360OsAffx.31660.2.S1_x_at10/1112+4907373..4909076expressed protein
LOC_Os12g09360OsAffx.31660.1.S1_at5/1112+4907373..4909076expressed protein
LOC_Os12g09360OsAffx.31660.3.S1_x_at4/1112+4907373..4909076expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015800biological_processacidic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0015810biological_processL-aspartate transport
GO:0015827biological_processL-tryptophan transport
GO:0005886cellular_componentplasma membrane
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0015399molecular_functionprimary active transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47745.1.S1_at--519--9051Chr12:4883426..4883450 (25 bp)
TGCAGGCCATGAGCTTCGTCTGCCT
LOC_Os12g09300
Os.47745.1.S1_at--495--4971Chr12:4883471..4883495 (25 bp)
GCATCGGCTCCGTCCAGGACATCGT
LOC_Os12g09300
Os.47745.1.S1_at--261--2951Chr12:4883506..4883530 (25 bp)
AAGGCTGCTGCACCCTTCAAGACTG
LOC_Os12g09300
Os.47745.1.S1_at--653--5091Chr12:4883515..4883539 (25 bp)
GCACCCTTCAAGACTGTCAACTGAT
LOC_Os12g09300
Os.47745.1.S1_at--1087--2751Chr12:4883524..4883548 (25 bp)
AAGACTGTCAACTGATCGATGATCA
LOC_Os12g09300
Os.47745.1.S1_at--1115--6411Chr12:4883602..4883626 (25 bp)
GATCTAGTTGTTAGCTCAGCAACAA
LOC_Os12g09300
Os.47745.1.S1_at--657--1691Chr12:4883635..4883659 (25 bp)
AGCCATCAGGGAGCTGCCTAGCTAG
LOC_Os12g09300
Os.47745.1.S1_at--909--4451Chr12:4883650..4883674 (25 bp)
GCCTAGCTAGAGCTGTGGCCTCATT
LOC_Os12g09300
Os.47745.1.S1_at--646--7551Chr12:4883664..4883688 (25 bp)
GTGGCCTCATTTTGTTTCTAATTTC
LOC_Os12g09300
Os.47745.1.S1_at--8--6591Chr12:4883716..4883740 (25 bp)
GATTGATCGATCTCAATGTACTGAG
LOC_Os12g09300
Os.47745.1.S1_at--619--8631Chr12:4883772..4883796 (25 bp)
TGGGCTTAATTTTGATCTTGGAGTA
LOC_Os12g09300
Target Sequence 
TGCAGGCCATGAGCTTCGTCTGCCTCCTCATCTCCATCGCCGCNAGCATCGGCTCCGTCCAGGACATCGTCCACAACCTC
AAGGCTGCTGCACCCTTCAAGACTGTCAACTGATCGATGATCATTAATTTGATCGCTTATTAAGTGGNTTAAATTATTCA
GTTAATTAATGATCGATGATCTAGTTGTTAGCTCAGCAACAAGCANCATCAGCCATCAGGGAGCTGCCTAGCTAGAGCTG
TGGCCTCATTTTGTTTCTAATTTCTTTCTCTCTGTTTTTTTTTTGGTGAATGATTGATCGATCTCAATGTACTGAGGTTG
GTTAATTTTTCTTGCTGCTGGTTAATTTGGGCTTAATTTTGATCTTGGAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis