Browse Element(s) Details


Os.47836.1.A1_at

Description gb:BI812693
DB_XREF= gi:16578598
DB_XREF=F010A07
CLONE=F010A07
TID=Os.47836.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47836 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g680504/11Transmembrane amino acid transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68010Os.7724.1.S1_at11/111+39865000..39867945TBC domain containing protein, expressed
LOC_Os01g68020Os.24338.1.A1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68020Os.11316.1.S1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68030Os.4675.1.S1_at5/111+39876192..39877575expressed protein
LOC_Os01g68040Os.26355.1.S1_at11/111+39878283..39882103CorA-like Mg2+ transporter protein, expressed
LOC_Os01g68050Os.8422.1.S1_at11/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68050Os.47836.1.A1_at4/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68060Os.11396.1.S1_at11/111+39892600..39896895Copine family protein, expressed
LOC_Os01g68070Os.52250.1.A1_at11/111+39903897..39907035salt-inducible protein, putative, expressed
LOC_Os01g68080OsAffx.23965.1.S1_at11/111+39907344..39908254Harpin-induced protein 1 containing protein
LOC_Os01g68090OsAffx.11785.1.S1_at11/111+39909204..39910571Harpin-induced protein 1 containing protein
LOC_Os01g68104OsAffx.2432.1.S1_at11/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104Os.19434.1.S1_at9/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.3.S1_at7/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.2.S1_x_at2/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.1.S1_at1/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015824biological_processL-proline transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015193molecular_functionL-proline transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47836.1.A1_at--1050--9531Chr01:39892452..39892476 (25 bp)
TCTTTGACGAACACATTGGACCTAA
LOC_Os01g68050
Os.47836.1.A1_at--1139--10731Chr01:39892455..39892479 (25 bp)
TTGACGAACACATTGGACCTAACCA
LOC_Os01g68050
Os.47836.1.A1_at--52--8091Chr01:39892469..39892493 (25 bp)
GGACCTAACCAATGTTAAGCTATGC
LOC_Os01g68050
Os.47836.1.A1_at--409--4871Chr01:39892487..39892511 (25 bp)
GCTATGCCAACCTATTACACTTGAC
LOC_Os01g68050
Os.47836.1.A1_at--322--3251Chr01:39892494..39892518 (25 bp)
CAACCTATTACACTTGACGCCGAAC
NONE
Os.47836.1.A1_at--141--5811Chr01:39892509..39892533 (25 bp)
GACGCCGAACACGATATTATTTTTA
NONE
Os.47836.1.A1_at--668--6511Chr01:39892521..39892545 (25 bp)
GATATTATTTTTACCGAGGACGGCA
NONE
Os.47836.1.A1_at--776--9951Chr01:39892532..39892556 (25 bp)
TACCGAGGACGGCATGATACCAGTG
NONE
Os.47836.1.A1_at--1056--8111Chr01:39892538..39892562 (25 bp)
GGACGGCATGATACCAGTGTAACAT
NONE
Os.47836.1.A1_at--894--5191Chr01:39892570..39892594 (25 bp)
GCAATTTGCAGGTATGCCGGCATCA
NONE
Os.47836.1.A1_at--479--211Chr01:39892573..39892597 (25 bp)
ATTTGCAGGTATGCCGGCATCAGAA
NONE
Target Sequence 
TCTTTGACGAACACATTGGACCTAACCAATGTTAAGCTATGCCAACCTATTACACTTGACGCCGAACACGATATTATTTT
TACCGAGGACGGCATGATACCAGTGTAACATAGTTGAGGCAATTTGCAGGTATGCCGGCATCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47836.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis