Browse Element(s) Details


Os.47859.1.S1_at

Description gb:AK067250.1
DB_XREF= gi:32977268
TID=Os.47859.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098L05, full insert sequence.
FL= gb:AK067250.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0524010/11Zinc carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05190Os.5200.1.S1_at11/116+2328884..2333422DNA repair protein XRCC1, putative, expressed
LOC_Os06g05200OsAffx.27461.1.S1_at11/116+2334681..2335298Zinc finger, C3HC4 type family protein
LOC_Os06g05200OsAffx.30568.1.S1_at1/116+2334681..2335298Zinc finger, C3HC4 type family protein
LOC_Os06g05209Os.5708.1.S1_at11/116+2335433..2337189Pectate lyase precursor, putative, expressed
LOC_Os06g05209OsAffx.18481.1.S1_x_at1/116+2335433..2337189Pectate lyase precursor, putative, expressed
LOC_Os06g05220OsAffx.4728.1.S1_at11/116+2339925..2341658hypothetical protein
LOC_Os06g05230OsAffx.8876.1.S1_at1/116+2342538..2348554retrotransposon protein, putative, unclassified
LOC_Os06g05240Os.47859.1.S1_at10/116+2357441..2364099Zinc carboxypeptidase family protein, expressed
LOC_Os06g05250Os.10307.1.S1_at11/116+2365603..2371092GTP-binding protein lepA, putative, expressed
LOC_Os06g05260Os.53028.1.S1_at11/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05260Os.1741.4.S1_x_at1/116+2371993..2373947Pectate lyase precursor, putative, expressed
LOC_Os06g05272Os.5708.1.S1_at9/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05272OsAffx.18481.1.S1_x_at1/116+2377130..2378274Pectate lyase precursor, putative
LOC_Os06g05284Os.5951.1.S1_at11/116+2379596..2381937Transferase family protein, expressed
LOC_Os06g05300OsAffx.27462.1.S1_at11/116+2383314..2385241Transferase family protein
LOC_Os06g05310OsAffx.27463.1.S1_x_at11/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05310OsAffx.10727.1.S1_x_at1/116+2386399..2389053Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004182molecular_functioncarboxypeptidase A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47859.1.S1_at--448--8311Chr06:2358085..2358109 (25 bp)
GGCTAGCAGGACTTATGGCGATTAC
LOC_Os06g05240
Os.47859.1.S1_at--1123--8451Chr06:2358070..2358094 (25 bp)
TGGCGATTACCATCGAATGCTTGCA
LOC_Os06g05240
Os.47859.1.S1_at--259--5931Chr06:2357645..2357669 (25 bp)
GAGCTTGGACTTCATCTTAGATCGA
LOC_Os06g05240
Os.47859.1.S1_at--580--7771Chr06:2357600..2357624 (25 bp)
GGTCCGTAATGACTTAGGTTGCCCA
LOC_Os06g05240
Os.47859.1.S1_at--214--3652Chr03:28320398..28320434 (24 bp)
CTTAGGTTGCCCATGTGACGACGAC
NONE
Os.47859.1.S1_at--790--10771Chr06:2357560..2357584 (25 bp)
TTGTTTCATGTGCAGGGAGCTCGCC
LOC_Os06g05240
Os.47859.1.S1_at--146--6811Chr06:2357518..2357542 (25 bp)
GTTTTGCTCATTATCATCGCACTGT
LOC_Os06g05240
Os.47859.1.S1_at--516--531Chr06:2357503..2357527 (25 bp)
ATCGCACTGTATGTTCTCTTCAAGA
LOC_Os06g05240
Os.47859.1.S1_at--841--111Chr06:2357462..2357486 (25 bp)
ATTCACGATTCACAGACATTCACCG
LOC_Os06g05240
Os.47859.1.S1_at--329--3351Chr06:2357442..2357466 (25 bp)
CACCGAAACGGCCAATTGCTGTATA
LOC_Os06g05240
Os.47859.1.S1_at--827--2271Chr06:2357389..2357413 (25 bp)
AAATCTGTAGCTGACCCAATAGTGA
NONE
Target Sequence 
GGCTAGCAGGACTTATGGCGATTACCATCGAATGCTTGCACCTGGTGAGAACTATGAAGTCATGGCATCTATGGAGGGNT
TCCGAACAAAAGCTACACGTATTGTGGTGGAGGAGAAGGCTGTGAGCTTGGACTTCATCTTAGATCGAGATGGAGCTAAT
GGACAAGTGGTCCGTAATGACTTAGGTTGCCCATGTGACGACGACNAGTTGTTTCATGTGCAGGGAGCTCGCCTCGAGCT
NTATCTATTTGTTTTGCTCATTATCATCGCACTGTATGTTCTCTTCAAGAGAAAAACAACATCGAAATTCACGATTCACA
GACATTCACCGAAACGGCCAATTGCTGTATAAGATTTAGAAAATTTTGCGAGTCGATACAAATCTGTAGCTGACCCAATA
GTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis