Browse Element(s) Details


Os.47896.1.A1_at

Description gb:AK107986.1
DB_XREF= gi:32993195
TID=Os.47896.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-F01, full insert sequence.
FL= gb:AK107986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4123011/11BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41180Os.7817.1.A1_s_at10/115+24039254..24043454Proteasome subunit alpha type 3, putative, expressed
LOC_Os05g41190Os.27687.1.S1_at11/115+24043901..24045244expressed protein
LOC_Os05g41200Os.54462.1.S1_at11/115+24047031..24047769EF hand family protein, expressed
LOC_Os05g41210Os.10290.1.S1_at8/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41210Os.57504.1.S1_x_at1/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41220Os.15191.1.S1_s_at11/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41220Os.27951.1.S1_at1/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41230Os.47896.1.A1_at11/115+24066128..24068334BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os05g41240Os.13978.1.S1_a_at11/115+24070525..24074848MYB transcription factor, putative, expressed
LOC_Os05g41250OsAffx.27273.1.S1_x_at11/115+24088126..24088692VQ motif family protein
LOC_Os05g41250OsAffx.27273.1.S1_at11/115+24088126..24088692VQ motif family protein
LOC_Os05g41259NANA5+24090501..24091191NA
LOC_Os05g41270OsAffx.15056.1.S1_s_at11/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g41270OsAffx.15056.1.S1_at10/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0016049biological_processcell growth
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47896.1.A1_at--343--6451Chr05:24066899..24066923 (25 bp)
GATCACAACCTTTTAACTGGGCCAA
LOC_Os05g41230
Os.47896.1.A1_at--406--2371Chr05:24066870..24066894 (25 bp)
AAACGAGCTGGCTGGGCTGTCAAAC
LOC_Os05g41230
Os.47896.1.A1_at--843--8331Chr05:24066859..24066880 (22 bp)
GGCTGTCAAACCTCATGATCCTAAA
LOC_Os05g41230
Os.47896.1.A1_at--260--2211Chr05:24066705..24066729 (25 bp)
ACAACGATCTCTGTGGGACAATCCC
LOC_Os05g41230
Os.47896.1.A1_at--102--3931Chr05:24066349..24066373 (25 bp)
CGGCCGCTAGATCATGGCAGCATGA
LOC_Os05g41230
Os.47896.1.A1_at--331--4651Chr05:24066293..24066317 (25 bp)
GCGTCAGGTTCTTCACCGGAAGCAA
LOC_Os05g41230
Os.47896.1.A1_at--794--7771Chr05:24066250..24066274 (25 bp)
GGTGCAGACTCTGTCGACCTGGAGC
LOC_Os05g41230
Os.47896.1.A1_at--428--4071Chr05:24066236..24066260 (25 bp)
CGACCTGGAGCTTCTTAGCATTAGA
LOC_Os05g41230
Os.47896.1.A1_at--735--10011Chr05:24066221..24066245 (25 bp)
TAGCATTAGAGTAGCTTGGCCGTAA
LOC_Os05g41230
Os.47896.1.A1_at--749--10211Chr05:24066167..24066191 (25 bp)
TATTATCTCAGCATTACGTACTTCT
LOC_Os05g41230
Os.47896.1.A1_at--959--1891Chr05:24066152..24066176 (25 bp)
ACGTACTTCTGTTTACTGGCATAGT
LOC_Os05g41230
Target Sequence 
GATCACAACCTTTTAACTGGGCCAATCCCAAACGAGCTGGCTGGGCTGTCAAACCTCATGATCCTAAATGTATCCAACAA
CGATCTCTGTGGGACAATCCCGACGTCCGGGCCGTTCGATCACTTCCCTCCGAGCAGCTTTGCCANCAACCCGCGGCTGA
GGTACCCCGGGATGGACGACGATGACACCGGCCGCTAGATCATGGCAGCATGAATTAACGAATAAAAAGAAGAGGACGGC
GGCGGCGTCAGGTTCTTCACCGGAAGCAAGCCTCGTCGGCGTCGATCGGTGCAGACTCTGTCGACCTGGAGCTTCTTAGC
ATTAGAGTAGCTTGGCCGTAATGGTAATGCTAATGAGTAATGACAATGATTATTATCTCAGCATTACGTACTTCTGTTTA
CTGGCATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47896.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis