Browse Element(s) Details


Os.47974.1.A1_at

Description gb:AK063276.1
DB_XREF= gi:32973294
TID=Os.47974.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47974 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-C05, full insert sequence.
FL= gb:AK063276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4443011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44390NANA3+24926302..24932187retrotransposon protein, putative, unclassified
LOC_Os03g44400Os.28943.1.S1_x_at1/113+24932818..24935988retrotransposon protein, putative, unclassified
LOC_Os03g44410OsAffx.13341.1.S1_at11/113+24949062..24949907hypothetical protein
LOC_Os03g44420Os.14365.1.S1_at11/113+24950778..24955159Cell division protein ftsZ, putative, expressed
LOC_Os03g44430Os.47974.1.A1_at11/113+24955821..24957685expressed protein
LOC_Os03g44440Os.52782.1.S1_at4/113+24958105..24961677Cyclic nucleotide-gated ion channel 9, putative, expressed
LOC_Os03g44450Os.55555.1.S1_at11/113+24963441..24964569expressed protein
LOC_Os03g44450Os.55555.1.S1_x_at11/113+24963441..24964569expressed protein
LOC_Os03g44450Os.5287.1.S1_at10/113+24963441..24964569expressed protein
LOC_Os03g44460OsAffx.32166.1218.S1_x_at3/113+24975872..24976942expressed protein
LOC_Os03g44470NANA3+24978534..24983551retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47974.1.A1_at--841--711Chr03:24956276..24956300 (25 bp)
ATGATACCGATCACGCCGCAAAGGG
LOC_Os03g44430
Os.47974.1.A1_at--664--3311Chr03:24956237..24956261 (25 bp)
CACAGGTCGAAGTTGGCGCTTGCAT
LOC_Os03g44430
Os.47974.1.A1_at--728--8391Chr03:24956223..24956247 (25 bp)
GGCGCTTGCATTCGAATTGGTCATC
LOC_Os03g44430
Os.47974.1.A1_at--815--7711Chr03:24956187..24956211 (25 bp)
GGTGGCAGTCTATCAACTCCATGAA
LOC_Os03g44430
Os.47974.1.A1_at--513--7591Chr03:24956126..24956150 (25 bp)
GGGCTTCAAGATGATTTCGCTGACA
LOC_Os03g44430
Os.47974.1.A1_at--632--8711Chr03:24956098..24956122 (25 bp)
TGTCGCTCCATGAACACACAGGGAA
LOC_Os03g44430
Os.47974.1.A1_at--1157--5271Chr03:24956003..24956027 (25 bp)
GAATGTTTGACTGCACTATCAAGCA
LOC_Os03g44430
Os.47974.1.A1_at--151--10211Chr03:24955951..24955975 (25 bp)
TATTACCTGGATTCACTTCAGTTTT
LOC_Os03g44430
Os.47974.1.A1_at--95--6811Chr03:24955931..24955955 (25 bp)
GTTTTGTTTTTCCATACATGCCTTA
LOC_Os03g44430
Os.47974.1.A1_at--159--4471Chr03:24955878..24955902 (25 bp)
GCCTGAATACATGAAGCTGGCTCAT
LOC_Os03g44430
Os.47974.1.A1_at--1097--8291Chr03:24955860..24955884 (25 bp)
GGCTCATTTATTTTCCGTTCAGTTT
LOC_Os03g44430
Target Sequence 
ATGATACCGATCACGCCGCAAAGGGATAGAGGTACCAAGCACAGGTCGAAGTTGGCGCTTGCATTCGAATTGGTCATCAA
GATGATTTTGGTGGCAGTCTATCAACTCCATGAATAATCACAGGTTGAAATTGGAGCTTGTGTTGCAAATGGGCTTCAAG
ATGATTTCGCTGACAGTCTGTCGCTCCATGAACACACAGGGAACAGNGAGCAACANAATGTACAATCAAGTAATCAACTA
CCATGGTAGGCAGAAATCCTGTTTAAGAGGATTGAATGTTTGACTGCACTATCAAGCAGTTGATAGTTGAGTGCAAACAT
TCTTGTATTACCTGGATTCACTTCAGTTTTGTTTTTCCATACATGCCTTAGTTTGTTAAGTATTGTAATCTTATAATAGC
CTGAATACATGAAGCTGGCTCATTTATTTTCCGTTCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47974.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis