Browse Element(s) Details


Os.48027.1.S1_x_at

Description gb:NM_197841.1
DB_XREF= gi:37537041
TID=Os.48027.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48027 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative transposase (OSJNBa0095C07.32), mRNA.
PROD=putative transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4216011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42110Os.46089.1.S1_at11/1110+22320335..22324577protein kinase family protein, putative, expressed
LOC_Os10g42130Os.21932.1.S1_at11/1110+22339832..22342131no apical meristem, putative, expressed
LOC_Os10g42150Os.9540.2.S1_at11/1110+22344952..22346899transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_x_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42170Os.46615.1.S1_at11/1110+22350399..22352513expressed protein
LOC_Os10g42180Os.46883.1.S1_at11/1110+22352591..22355066Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os10g42190Os.11604.2.S1_at11/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.11604.1.S1_at10/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.49252.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.46673.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42196Os.23268.1.S1_at11/1110+22369432..22377421expressed protein
LOC_Os10g42196Os.23268.1.S2_at11/1110+22369432..22377421expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48027.1.S1_x_at--567--191Chr10:22348080..22348104 (25 bp)
ATTTGTTGGGTTCAATCAGTTCAGG
LOC_Os10g42160
Os.48027.1.S1_x_at--127--4751Chr10:22348037..22348061 (25 bp)
GCTGTTCTCATGTACGATGAGACAT
LOC_Os10g42160
Os.48027.1.S1_x_at--860--5673Chr12:7301108..7301132 (25 bp)
GACATATGAGTCCTTCAAGTGGTTA
NONE
Os.48027.1.S1_x_at--51--6891Chr10:22347902..22347926 (25 bp)
GTATTTTCAGAAGTATGGCATGGTC
LOC_Os10g42160
Os.48027.1.S1_x_at--800--1191Chr10:22347891..22347915 (25 bp)
AGTATGGCATGGTCTGTGCACTTTC
LOC_Os10g42160
Os.48027.1.S1_x_at--94--7811Chr10:22347881..22347905 (25 bp)
GGTCTGTGCACTTTCCATATTATGC
LOC_Os10g42160
Os.48027.1.S1_x_at--266--10431Chr10:22347862..22347886 (25 bp)
TTATGCAGAATGCTGCCAAGCATCT
LOC_Os10g42160
Os.48027.1.S1_x_at--774--9191Chr10:22347849..22347873 (25 bp)
TGCCAAGCATCTAGCTGAAGTCGAC
LOC_Os10g42160
Os.48027.1.S1_x_at--1139--9211Chr10:22347812..22347836 (25 bp)
TCCAGTACTTCTCCCGAACAGATAG
LOC_Os10g42160
Os.48027.1.S1_x_at--261--5571Chr10:22347774..22347798 (25 bp)
GAAAGAACCAAGTATTCTCGCAGAT
LOC_Os10g42160
Os.48027.1.S1_x_at--695--6872Chr10:18896453..18896477 (25 bp)
GTATTCTCGCAGATTTTAGTGCATG
NONE
Target Sequence 
ATTTGTTGGGTTCAATCAGTTCAGGGANACANTNGTTTTTGGTGCTGTTCTCATGTACGATGAGACATATGAGTCCTTCA
AGTGGTTATTNGAGACCTTTCTAAAAGCACATAATGGCAAGCAACCTAAAACAATCTATACTGATCAAGATTTTGCAATG
GGAAAAGCAGTTAAGGAAGTATTTTCAGAAGTATGGCATGGTCTGTGCACTTTCCATATTATGCAGAATGCTGCCAAGCA
TCTAGCTGAAGTCGACAATNAAGANGAATCCAGTACTTCTCCCGAACAGATAGNTGANGACAATGAGAAAGAACCAAGTA
TTCTCGCAGATTTTAGTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48027.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis