Browse Element(s) Details


Os.48043.1.S1_at

Description gb:AK059334.1
DB_XREF= gi:32969352
TID=Os.48043.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010A16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A10, full insert sequence.
FL= gb:AK059334.1 gb:AK100131.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5066011/11PX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50624Os.51355.1.S1_at11/115+28938490..28940826hAT family dimerisation domain containing protein, expressed
LOC_Os05g50624Os.7726.1.S1_at9/115+28938490..28940826hAT family dimerisation domain containing protein, expressed
LOC_Os05g50640Os.54158.1.S1_at11/115+28945595..28949500hAT family dimerisation domain containing protein, expressed
LOC_Os05g50650Os.36306.2.S1_x_at2/115+28950692..28952249retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50660Os.48043.1.S2_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.48043.1.S1_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.22458.1.S1_s_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50670OsAffx.4678.1.S1_at11/115+28963570..28963788hypothetical protein
LOC_Os05g50680Os.55821.1.S1_at11/115+28968015..28969162expressed protein
LOC_Os05g50680Os.36376.2.S1_x_at2/115+28968015..28969162expressed protein
LOC_Os05g50690OsAffx.27395.1.S1_at11/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_x_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50700OsAffx.15184.1.S1_at11/115+28981383..28982543WRKY DNA binding domain containing protein, expressed
LOC_Os05g50710Os.15872.1.S1_at10/115+28986036..28987287Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os05g50720Os.51602.1.S1_at11/115+28987934..28988957Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007242biological_processintracellular signaling cascade
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48043.1.S1_at--827--2131Chr05:28958088..28958112 (25 bp)
ACAGACCATGGATATCAGCTCCCAG
LOC_Os05g50660
Os.48043.1.S1_at--1029--2431Chr05:28958116..28958140 (25 bp)
AAAAGTCAAGCCCTAGCACCTGAGC
LOC_Os05g50660
Os.48043.1.S1_at--651--6011Chr05:28958202..28958226 (25 bp)
GAGAGTACCTTCCAAATCTTCTTCT
LOC_Os05g50660
Os.48043.1.S1_at--287--2271Chr05:28958215..28958239 (25 bp)
AAATCTTCTTCTCTAGGCACTTCTC
LOC_Os05g50660
Os.48043.1.S1_at--157--2151Chr05:28958261..28958285 (25 bp)
ACAGCACTTCTGTTGGTCATTATCC
LOC_Os05g50660
Os.48043.1.S1_at--610--7131Chr05:28958276..28958300 (25 bp)
GTCATTATCCTAGTGCTCCACAAAG
LOC_Os05g50660
Os.48043.1.S1_at--368--7171Chr05:28958313..28958337 (25 bp)
GTCTCGTTCTGATGACCAACATTTG
LOC_Os05g50660
Os.48043.1.S1_at--129--9831Chr05:28958340..28958364 (25 bp)
TAAACACTCAACTACTGCTGCATAC
LOC_Os05g50660
Os.48043.1.S1_at--865--2451Chr05:28958482..28958506 (25 bp)
AACAATGTGACTGGGCTTGACTCTC
LOC_Os05g50660
Os.48043.1.S1_at--384--2931Chr05:28958537..28958561 (25 bp)
AAGGAAATGCCACCTCATCACATAT
LOC_Os05g50660
Os.48043.1.S1_at--1030--531Chr05:28958567..28958591 (25 bp)
ATCCACTTGAATCTCCAGGTTTCCA
LOC_Os05g50660
Target Sequence 
ACAGACCATGGATATCAGCTCCCAGCNAAAAAGTCAAGCCCTAGCACCTGAGCACCTTGAGAACATGTGGACTAAAGGGA
AGAATTACAAATCAGAAAATGTAAAACATGTTGNGAGAGTACCTTCCAAATCTTCTTCTCTAGGCACTTCTCCAGTGCAG
CAGTCAGCTCCTTACAGCACTTCTGTTGGTCATTATCCTAGTGCTCCACAAAGGCAGACAACTATGTCTCGTTCTGATGA
CCAACATTTGATTAAACACTCAACTACTGCTGCATACTTAAATGGCACCAATCATCTGAGGATGGCTTTATCCAGAGAAA
GTGCAGATCATGCCAGCCAAGAAGACTTTGGAGTGGACAGTGAGAGTTCATATGCCACTGAGGAGGATGAGAATAACAAT
GTGACTGGGCTTGACTCTCCAGTAACGAGAGTTTGGGACAGCAAAAGTAAAGGAAATGCCACCTCATCACATATACACCA
TCCACTTGAATCTCCAGGTTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis