Browse Element(s) Details


Os.48074.1.A1_at

Description gb:AK067851.1
DB_XREF= gi:32977869
TID=Os.48074.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48074 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123P12, full insert sequence.
FL= gb:AK067851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1991011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19880NANA5+11563591..11565410retrotransposon protein, putative, unclassified
LOC_Os05g19890NANA5+11565942..11567222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.10731.1.A1_a_at11/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.38764.1.S1_x_at8/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.46610.1.S1_x_at4/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.45173.1.S1_x_at3/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.45173.3.S1_x_at3/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900OsAffx.8473.1.S1_x_at3/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.45173.3.S1_at3/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.48015.1.A1_x_at2/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.10263.1.S1_at2/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900OsAffx.20733.1.A1_x_at2/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.51841.1.S1_x_at1/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.47999.3.A1_x_at1/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.47999.2.A1_x_at1/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.45902.1.A1_x_at1/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19910Os.48074.1.A1_at11/115+11588767..11594325Transferase family protein, expressed
LOC_Os05g19920OsAffx.14764.1.S1_at11/115+11599910..11600128hypothetical protein
LOC_Os05g19930Os.51348.1.S1_x_at3/115+11611273..11615092retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19940NANA5+11616289..11617095hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48074.1.A1_at--880--7571Chr05:11589325..11589349 (25 bp)
GGGCTACTATGGCAACTGCTTTTAT
LOC_Os05g19910
Os.48074.1.A1_at--883--1971Chr05:11589311..11589335 (25 bp)
ACTGCTTTTATCCAGTGACTGTGAC
LOC_Os05g19910
Os.48074.1.A1_at--586--6211Chr05:11589217..11589241 (25 bp)
GAGGCTCCCCATGGAGTTTGCAAAG
LOC_Os05g19910
Os.48074.1.A1_at--569--5571Chr05:11589175..11589199 (25 bp)
GAAAGTTGATCCCTACGCATTGACA
LOC_Os05g19910
Os.48074.1.A1_at--579--9851Chr05:11589079..11589103 (25 bp)
TACACCTAATCACATCATACCATTC
LOC_Os05g19910
Os.48074.1.A1_at--1091--2011Chr05:11589044..11589068 (25 bp)
ACTACATGGCAGTCGCAGTGCTTGG
LOC_Os05g19910
Os.48074.1.A1_at--1035--7771Chr05:11589021..11589045 (25 bp)
GGTGCTCCACCAATGCCAAAGAAAG
LOC_Os05g19910
Os.48074.1.A1_at--345--1071Chr05:11588998..11589022 (25 bp)
AGGGACCCGGATTATGACACAGTGT
LOC_Os05g19910
Os.48074.1.A1_at--407--8871Chr05:11588876..11588900 (25 bp)
TGAGTAGTATTTGCAGGGTCCAATC
LOC_Os05g19910
Os.48074.1.A1_at--1032--7691Chr05:11588861..11588885 (25 bp)
GGGTCCAATCAATACCATGCTTGTT
LOC_Os05g19910
Os.48074.1.A1_at--79--6831Chr05:11588770..11588791 (22 bp)
GTTTAGCTTGTGAAGTGCACCAATT
LOC_Os05g19910
Target Sequence 
GGGCTACTATGGCAACTGCTTTTATCCAGTGACTGTGACAGCAATAGCTGAGGATGTTGCCACCAAAGAGTTGCTTGATG
TGATCAAGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTTTGCAAAGTGGGCTTCAGGGGATGTGAAAGTTGAT
CCCTACGCATTGACATTTGAACACAATGTGCTTTTTGTGTCTGATTGGACGAGGTTAGGATTCTTCGAGGTAGACTATGG
GTGGGGTACACCTAATCACATCATACCATTCACTTATGCAGACTACATGGCAGTCGCAGTGCTTGGTGCTCCACCAATGC
CAAAGAAAGGGACCCGGATTATGACACAGTGTGTGGAGAACAAGTGTATCAAGGAGTTCCAAGATGAGATGAAGGCCTTC
ATATAATATATATTATATGTGTAGTAGGTTGGAATAAATTTGCTATTTATGAGTAGTATTTGCAGGGTCCAATCAATACC
ATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACAATTATATATACGTGTGTTAATTAAGTTATAAGNAGT
TTAGCTTGTGAAGTGCACCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48074.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis