Browse Element(s) Details


Os.48218.1.S1_at

Description gb:AK111639.1
DB_XREF= gi:37988302
TID=Os.48218.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48218 (NCBI UniGene Cluster)
UG_TITLE=OsARF7b mRNA for auxin response factor 7b, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122A07, full insert sequence.
FL= gb:AK111639.1 gb:AK059543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4090011/11Auxin response factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40840OsAffx.17444.1.S1_at11/118+25712545..25715139Exo70 exocyst complex subunit family protein
LOC_Os08g40850Os.14971.1.S1_at11/118+25715842..25720263Mitochondrial carrier protein, expressed
LOC_Os08g40860Os.37268.1.S1_at11/118+25720886..25724289pseudouridine synthase family protein, putative, expressed
LOC_Os08g40870OsAffx.29613.1.S1_at11/118+25724317..25725498pentatricopeptide, putative, expressed
LOC_Os08g40880Os.10684.1.S1_at11/118+25726174..25732019oligouridylate-binding protein, putative, expressed
LOC_Os08g40890Os.49085.1.S2_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40890Os.49085.1.S1_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40900Os.48218.1.S1_at11/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40900Os.48218.1.S2_at9/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40910Os.11112.1.S1_s_at11/118+25755406..25756197expressed protein
LOC_Os08g40920NANA8+25757172..25758170hypothetical protein
LOC_Os08g40930Os.3414.1.A1_at9/118+25760725..25767733isoamylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009630biological_processgravitropism
GO:0009638biological_processphototropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009785biological_processblue light signaling pathway
GO:0009908biological_processflower development
GO:0040008biological_processregulation of growth
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48218.1.S1_at--968--3071Chr08:25741036..25741060 (25 bp)
AATCAGTTTTCACCCGCAGTTCTTG
LOC_Os08g40900
Os.48218.1.S1_at--941--6751Chr08:25740994..25741018 (25 bp)
GTTCAACACTGCGTTGGTACCTCAA
LOC_Os08g40900
Os.48218.1.S1_at--932--6751Chr08:25740939..25740963 (25 bp)
GTTATCCCTACACCAAACCAATTGG
LOC_Os08g40900
Os.48218.1.S1_at--814--3291Chr08:25740867..25740891 (25 bp)
CAAAGGCAGCATGTGGTTACTCAAC
LOC_Os08g40900
Os.48218.1.S1_at--851--6771Chr08:25740852..25740876 (25 bp)
GTTACTCAACCAGTGCAAGGCAGCC
LOC_Os08g40900
Os.48218.1.S1_at--9--2411Chr08:25740823..25740847 (25 bp)
AAACATAAACATTCCACAGCCTCAG
LOC_Os08g40900
Os.48218.1.S1_at--1100--5171Chr08:25740769..25740793 (25 bp)
GCAAGTCATTCTCCAGGCGCAACTG
LOC_Os08g40900
Os.48218.1.S1_at--644--2631Chr08:25740740..25740764 (25 bp)
AACCTCAAGTTGTTGTCCAGGCCCA
LOC_Os08g40900
Os.48218.1.S1_at--733--10611Chr08:25740697..25740721 (25 bp)
TTCGGTCCAAAGTCACACTGTCTTA
LOC_Os08g40900
Os.48218.1.S1_at--500--1031Chr08:25740667..25740691 (25 bp)
AGGTCTTCAACAAATCCAGCTTCTC
LOC_Os08g40900
Os.48218.1.S1_at--799--4351Chr08:25740556..25740580 (25 bp)
CCAGCAGGTTCAGCAGTCAGTACAG
LOC_Os08g40900
Target Sequence 
AATCAGTTTTCACCCGCAGTTCTTGCAACAAAACAACATCCAGTTCAACACTGCGTTGGTACCTCAACAAAACCAACAGA
CAGAACAATTAGCGAAAGTTATCCCTACACCAAACCAATTGGGAAGTGTTATAATACCGCAGAAGGTGGTTCAGGATTGC
AACTCTGAACAAAGGCAGCATGTGGTTACTCAACCAGTGCAAGGCAGCCAGCCAAACATAAACATTCCACAGCCTCAGCT
TGTTGTTCAGGCTCAGCTTCAGCAACCGCAAGTCATTCTCCAGGCGCAACTGCAGCAACCTCAAGTTGTTGTCCAGGCCC
AACTCCAGCAAACGCAACCTTCGGTCCAAAGTCACACTGTCTTACAAGGAGGTCTTCAACAAATCCAGCTTCTCCAGCAG
CAACAGCCACATGTGCAGCACCAGCAGATACCGCAACAGTTACATCATCAGCAGCAGCAAACACAACAGTTGCAACCTGT
CCAGCAGGTTCAGCAGTCAGTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis