Browse Element(s) Details


Os.48346.1.S1_at

Description gb:CA765773
DB_XREF= gi:27547586
DB_XREF=AF53-Rpf_08_M20_T7_072.ab1
CLONE=C0002996
TID=Os.48346.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48346 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565741.1 (A.thaliana) putative myosin heavy chain (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5246010/11Viral A-type inclusion protein repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52430OsAffx.26572.1.S1_at11/114+30941815..30944324expressed protein
LOC_Os04g52430OsAffx.25952.1.S1_s_at1/114+30941815..30944324expressed protein
LOC_Os04g52440Os.53822.1.S1_x_at11/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52440OsAffx.26573.1.S1_x_at1/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.14095.1.S1_at11/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450OsAffx.26573.1.S1_x_at10/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.53822.1.S1_x_at1/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52460Os.9644.1.S1_at11/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.48346.1.S1_at10/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.38093.1.S1_at3/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52479Os.47617.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479OsAffx.14377.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.3.S1_x_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.4.S1_x_at4/114+30984708..30995628expressed protein
LOC_Os04g52479Os.49445.1.S1_at2/114+30984708..30995628expressed protein
LOC_Os04g52500Os.16854.1.S1_at11/114+30996071..31000524lecithine cholesterol acyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48346.1.S1_at--558--9791Chr04:30973450..30973474 (25 bp)
TAAGCTGGCCATGCTTCGTGAACTA
LOC_Os04g52460
Os.48346.1.S1_at--861--5491Chr04:30973478..30973502 (25 bp)
GAACAGTTTGATTCTACTCATGCTG
LOC_Os04g52460
Os.48346.1.S1_at--1097--1451Chr04:30973510..30973534 (25 bp)
AGAAGTTTTCACGAAGCTATCTGCG
LOC_Os04g52460
Os.48346.1.S1_at--526--1191Chr04:30973571..30973595 (25 bp)
AGTAGAGGCTTAGAACTCCACGCTA
LOC_Os04g52460
Os.48346.1.S1_at--491--5471Chr04:30973583..30973607 (25 bp)
GAACTCCACGCTACAGCTGAATCAA
LOC_Os04g52460
Os.48346.1.S1_at--388--1391Chr04:30973678..30973702 (25 bp)
AGACTTGAATGAGAGGCTGGCTGCT
LOC_Os04g52460
Os.48346.1.S1_at--79--8331NONE
GGCTGCTCTTGAGTCCGAGATTGGA
NONE
Os.48346.1.S1_at--813--6851Chr04:30973722..30973746 (25 bp)
GTTTGACGCATGTGAATGAAGCCAT
LOC_Os04g52460
Os.48346.1.S1_at--847--3011Chr04:30973760..30973784 (25 bp)
AATGCTAAGCTGGTCAAGGTTGATG
LOC_Os04g52460
Os.48346.1.S1_at--244--10871Chr04:30973895..30973919 (25 bp)
TTGGAGCTCCAGTCTGCTGCTGAAT
LOC_Os04g52460
Os.48346.1.S1_at--405--1151Chr04:30973905..30973929 (25 bp)
AGTCTGCTGCTGAATCGAGATCTGC
LOC_Os04g52460
Target Sequence 
TAAGCTGGCCATGCTTCGTGAACTACAGGAACAGTTTGATTCTACTCATGCTGAGAAAGAAGAAGTTTTCACGAAGCTAT
CTGCGCATGAGAAAACGATAGAGCATTTGACTGAGGTGCACAGTAGAGGCTTAGAACTCCACGCTACAGCTGAATCAAAG
AATGCAGAACTTGAAGCGCAAATGCATGAAGCTCTTGAGACAATAGGGAAGAAAGATTCAGAAGTAAAAGACTTGAATGA
GAGGCTGGCTGCTCTTGAGTCCGAGATTGGAAGTTTGACGCATGTGAATGAAGCCATGAGACAGGAAATCAATGCTAAGC
TGGTCAAGGTTGATGAGCTGCAGGAGAAATTGAGTTCCATAAGTTCTGAGAAAGAAGAAGTTGCAGAGAAAGTGGTTGTT
CATGAGAAAACAATAGAACATTTGAGAGAAGAGCACTCAAGGGGCTTGGAGCTCCAGTCTGCTGCTGAATCGAGATCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis