Browse Element(s) Details


Os.48498.1.S1_at

Description gb:AK109678.1
DB_XREF= gi:32994887
TID=Os.48498.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-C05, full insert sequence.
FL= gb:AK109678.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0811011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08050Os.12625.1.S1_a_at11/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050Os.12625.1.S1_x_at6/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050Os.12625.4.S1_x_at5/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050Os.12625.2.S1_x_at5/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050Os.12625.6.S1_x_at4/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08050Os.57463.1.S1_x_at3/113+4089486..4092860Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.12625.1.S1_a_at11/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.12625.1.S1_x_at9/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.12625.4.S1_x_at8/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.12625.6.S1_x_at7/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.12625.2.S1_x_at5/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08060Os.57463.1.S1_x_at3/113+4096035..4098979Elongation factor 1-alpha, putative, expressed
LOC_Os03g08070Os.26448.1.A1_at11/113+4099099..4106050copper-translocating P-type ATPase family protein, expressed
LOC_Os03g08080Os.27944.1.S1_at10/113+4108770..4110263YGGT family protein, expressed
LOC_Os03g08090Os.50444.1.S1_at11/113+4110245..4111661hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os03g08100Os.14134.1.S1_at10/113+4112575..4115607hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g08110Os.48498.1.S1_at11/113+4116077..4121832hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g08120OsAffx.15367.1.S1_at1/113+4124340..4127243retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g08130OsAffx.25014.1.S1_at11/113+4127938..4129282hypothetical protein
LOC_Os03g08140Os.7286.1.S1_at11/113+4129867..4136536Tubulin-tyrosine ligase family protein, expressed
LOC_Os03g08150OsAffx.12776.1.S1_at11/113+4136722..4137464Cupin family protein, expressed
LOC_Os03g08160OsAffx.3171.1.S1_at11/113+4140669..4144127hypothetical protein
LOC_Os03g08160Os.7286.1.S1_at1/113+4140669..4144127hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48498.1.S1_at--584--3191Chr03:4116657..4116681 (25 bp)
CAAGGACCAGGTGTTCCCGTTGGAT
LOC_Os03g08110
Os.48498.1.S1_at--388--2311Chr03:4116492..4116514 (23 bp)
AAAGGCATCTGGGAGACGTGTCACG
LOC_Os03g08110
Os.48498.1.S1_at--538--1911Chr03:4116477..4116501 (25 bp)
ACGTGTCACGGCTAGAGATCATCAA
LOC_Os03g08110
Os.48498.1.S1_at--893--9591Chr03:4116459..4116483 (25 bp)
TCATCAAGGACGCAGGGCACGCGTT
LOC_Os03g08110
Os.48498.1.S1_at--617--1071Chr03:4116426..4116450 (25 bp)
AGGGAGCCGACCAAGTGAACCGCTT
LOC_Os03g08110
Os.48498.1.S1_at--1110--1131Chr03:4116396..4116420 (25 bp)
AGTCTTTCCTCCTGGACTCGTGAAA
LOC_Os03g08110
Os.48498.1.S1_at--348--8031Chr03:4116357..4116381 (25 bp)
GGAGTGGCCCAGTACTAGAGCCCTG
LOC_Os03g08110
Os.48498.1.S1_at--1119--491Chr03:4116283..4116307 (25 bp)
ACTGTAACCCGGATTTGCCCTCTAT
LOC_Os03g08110
Os.48498.1.S1_at--459--3431Chr03:4116255..4116279 (25 bp)
CAGATGCCGATAGTGTAATGACCCT
LOC_Os03g08110
Os.48498.1.S1_at--1129--2971Chr03:4116160..4116184 (25 bp)
AATGTGATGCTCACGGACTCTGTTT
LOC_Os03g08110
Os.48498.1.S1_at--972--3751Chr03:4116131..4116155 (25 bp)
CTCTTGACTATGGAACTGCAGGCAG
LOC_Os03g08110
Target Sequence 
CAAGGACCAGGTGTTCCCGTTGGATCTCGNCCACAGACTGCAAAGGCATCTGGGAGACGTGTCACGGCTAGAGATCATCA
AGGACGCAGGGCACGCGTTGCAGTTGGAGGGAGCCGACCAAGTGAACCGCTTCATCAAGTCTTTCCTCCTGGACTCGTGA
AATGGNCCGGAAGTTGGGAGTGGCCCAGTACTAGAGCCCTGCTAAGAAGTACTAGAAGCAGGAGCTCTCGGAAAGGCCCA
AACCAATCCAACTGTAACCCGGATTTGCCCTCTATCCTCAGATGCCGATAGTGTAATGACCCTATTTGGGATGTNANNAA
TATATACNGTGAACTATTGATNAATTGTCAAATATGAAATCTCCCAANAAAAAAATGTGATGCTCACGGACTCTGTTTTT
TCCTCTTGACTATGGAACTGCAGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis