Browse Element(s) Details


Os.48544.1.S1_at

Description gb:AK072768.1
DB_XREF= gi:32982791
TID=Os.48544.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136M05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136M05, full insert sequence.
FL= gb:AK072768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0540010/11Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05360Os.28301.1.S1_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05360Os.28301.1.S2_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05370Os.53726.1.S1_at11/117+2456574..2460377protein kinase family protein, putative, expressed
LOC_Os07g05380OsAffx.28287.1.S1_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05380Os.8365.1.S1_s_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05390OsAffx.28288.1.S1_s_at11/117+2466882..2472086expressed protein
LOC_Os07g05390OsAffx.28288.1.S1_at10/117+2466882..2472086expressed protein
LOC_Os07g05400Os.1.1.S1_s_at11/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05400Os.48544.1.S1_at10/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05410OsAffx.28289.1.S1_at10/117+2483220..2484308hypothetical protein
LOC_Os07g05420Os.54631.1.A1_at8/117+2487098..2488701Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os07g05430OsAffx.915.1.S1_at8/117+2495670..2499971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05440Os.50940.1.S1_a_at11/117+2500963..2506064retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48544.1.S1_at--268--7371Chr07:2475182..2475206 (25 bp)
GTGAAATCATACCAGCTTTTCATGG
LOC_Os07g05400
Os.48544.1.S1_at--936--5571Chr07:2475180..2475204 (25 bp)
GAAATCATACCAGCTTTTCATGGGC
LOC_Os07g05400
Os.48544.1.S1_at--382--2271Chr07:2475179..2475203 (25 bp)
AAATCATACCAGCTTTTCATGGGCA
LOC_Os07g05400
Os.48544.1.S1_at--751--3071Chr07:2475178..2475202 (25 bp)
AATCATACCAGCTTTTCATGGGCAT
LOC_Os07g05400
Os.48544.1.S1_at--278--431Chr07:2475177..2475201 (25 bp)
ATCATACCAGCTTTTCATGGGCATC
LOC_Os07g05400
Os.48544.1.S1_at--953--9591Chr07:2475176..2475200 (25 bp)
TCATACCAGCTTTTCATGGGCATCA
LOC_Os07g05400
Os.48544.1.S1_at--511--3571Chr07:2475175..2475199 (25 bp)
CATACCAGCTTTTCATGGGCATCAT
LOC_Os07g05400
Os.48544.1.S1_at--430--311Chr07:2475174..2475198 (25 bp)
ATACCAGCTTTTCATGGGCATCATG
LOC_Os07g05400
Os.48544.1.S1_at--201--9991Chr07:2475173..2475197 (25 bp)
TACCAGCTTTTCATGGGCATCATGC
LOC_Os07g05400
Os.48544.1.S1_at--347--1711Chr07:2475172..2475196 (25 bp)
ACCAGCTTTTCATGGGCATCATGCA
LOC_Os07g05400
Os.48544.1.S1_at--457--2291NONE
AAATGTGAAGTAGTGGGACTTTCCT
NONE
Target Sequence 
GTGAAATCATACCAGCTTTTCATGGGCATCATGCATGANAAAAATGTGAAGTAGTGGGACTTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis