Browse Element(s) Details


Os.4893.1.S1_at

Description gb:AK100184.1
DB_XREF= gi:32985393
TID=Os.4893.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031H12, full insert sequence.
FL= gb:AK111676.1 gb:AK100184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2981011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g29780OsAffx.20380.1.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.20380.2.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22711.3.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22711.4.A1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.20380.1.S1_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22711.1.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22927.1.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29790Os.53938.1.S1_at11/115+17156022..17159114Pectinesterase family protein, expressed
LOC_Os05g29800OsAffx.27076.1.S1_at11/115+17160992..17162364hypothetical protein
LOC_Os05g29810Os.4893.1.S1_at11/115+17166002..17167249AP2 domain containing protein, expressed
LOC_Os05g29820Os.45976.1.S1_x_at1/115+17178789..17182432transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g29829NANA5+17186085..17186294hypothetical protein
LOC_Os05g29840OsAffx.31869.4.S1_x_at10/115+17187251..17188009retrotransposon protein, putative, unclassified
LOC_Os05g29840OsAffx.31869.4.S1_at9/115+17187251..17188009retrotransposon protein, putative, unclassified
LOC_Os05g29840OsAffx.31869.3.S1_x_at8/115+17187251..17188009retrotransposon protein, putative, unclassified
LOC_Os05g29840OsAffx.31869.3.S1_s_at4/115+17187251..17188009retrotransposon protein, putative, unclassified
LOC_Os05g29840OsAffx.31869.3.S1_at3/115+17187251..17188009retrotransposon protein, putative, unclassified
LOC_Os05g29840OsAffx.31869.5.S1_x_at2/115+17187251..17188009retrotransposon protein, putative, unclassified
LOC_Os05g29850Os.46306.1.S1_x_at7/115+17190324..17193658transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0008219biological_processcell death
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009723biological_processresponse to ethylene stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4893.1.S1_at--239--4111Chr05:17166822..17166846 (25 bp)
CGACATGATGCTCGAGTAGGCTCGC
LOC_Os05g29810
Os.4893.1.S1_at--733--5271Chr05:17166850..17166874 (25 bp)
GAATGGCAGCGTTGCCATGCTCATG
LOC_Os05g29810
Os.4893.1.S1_at--553--3531Chr05:17166865..17166889 (25 bp)
CATGCTCATGCATCCAAGCTTATTC
LOC_Os05g29810
Os.4893.1.S1_at--27--3251Chr05:17166879..17166903 (25 bp)
CAAGCTTATTCATGCATGCAGCAGC
LOC_Os05g29810
Os.4893.1.S1_at--620--10031Chr05:17166985..17167009 (25 bp)
TAGGGTGTTCTTCTGGGAATCCTTG
LOC_Os05g29810
Os.4893.1.S1_at--628--8191Chr05:17167000..17167024 (25 bp)
GGAATCCTTGGCTTTGCTAATTGCT
LOC_Os05g29810
Os.4893.1.S1_at--44--2031Chr05:17167028..17167052 (25 bp)
ACTACTATGTACTTTGGCGTTAAGC
LOC_Os05g29810
Os.4893.1.S1_at--592--3591Chr05:17167057..17167081 (25 bp)
CATTGCCAGGTGATGCATGTCATGT
LOC_Os05g29810
Os.4893.1.S1_at--291--8591Chr05:17167087..17167111 (25 bp)
TGGTAATTATATGGCCGTCCTCCTA
LOC_Os05g29810
Os.4893.1.S1_at--822--1411Chr05:17167153..17167177 (25 bp)
AGAAATATATGTCCTCCTAGAGCTA
LOC_Os05g29810
Os.4893.1.S1_at--872--2991Chr05:17167191..17167215 (25 bp)
AATGATTTCAGACTTCTTGGGCAAC
LOC_Os05g29810
Target Sequence 
CGACATGATGCTCGAGTAGGCTCGCCGGGAATGGCAGCGTTGCCATGCTCATGCATCCAAGCTTATTCATGCATGCAGCA
GCAAGATATACAACTTTAGTACTACTACTATGTTAATTACTACTTACTGCGTAGGTAAATGAAATAAAATGGGGTTGGTT
AATTAGGGTGTTCTTCTGGGAATCCTTGGCTTTGCTAATTGCTAGTACTACTATGTACTTTGGCGTTAAGCATTGCATTG
CCAGGTGATGCATGTCATGTAATCGTGGTAATTATATGGCCGTCCTCCTAGAGCTAGCTAGCAGATTAGATTTACTATAT
AAAGTGGTAGTAGAAATATATGTCCTCCTAGAGCTAACTAGTGTCTTGTAATGATTTCAGACTTCTTGGGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis