Browse Element(s) Details


Os.4895.1.S1_at

Description gb:NM_185747.1
DB_XREF= gi:34898579
GEN=P0534A03.16
TID=Os.4895.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4895 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0534A03.16 (P0534A03.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0534A03.16 (P0534A03.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3642011/11proteasome inhibitor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36400Os.29958.1.S1_at11/117+21758911..21762320expressed protein
LOC_Os07g36400Os.29958.2.S1_x_at10/117+21758911..21762320expressed protein
LOC_Os07g36400Os.22353.3.S1_x_at1/117+21758911..21762320expressed protein
LOC_Os07g36410Os.44707.1.S1_at11/117+21781555..21784842expressed protein
LOC_Os07g36410Os.44707.2.S1_x_at11/117+21781555..21784842expressed protein
LOC_Os07g36420Os.4895.1.S1_at11/117+21786984..21792146proteasome inhibitor, putative, expressed
LOC_Os07g36430Os.31021.1.S1_at10/117+21796589..21797208expressed protein
LOC_Os07g36439OsAffx.1550.1.S1_at2/117+21798568..21798777NA
LOC_Os07g36450Os.10560.1.S1_at11/117+21801037..21803585pentatricopeptide, putative, expressed
LOC_Os07g36460OsAffx.28779.1.S1_at10/117+21812540..21814354Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g36470NANA7+21814902..21817249Vacuolar ATP synthase subunit H, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4895.1.S1_at--1058--8831Chr07:21790647..21790671 (25 bp)
TGATCGGTGATGTCCTTGCCATTGA
LOC_Os07g36420
Os.4895.1.S1_at--523--6271Chr07:21790624..21790648 (25 bp)
GATGTCCTGGATCTTGAGTCACAGA
LOC_Os07g36420
Os.4895.1.S1_at--375--5291Chr07:21790071..21790095 (25 bp)
GAAGGATTTCTTCTCCGAGGAGCAG
LOC_Os07g36420
Os.4895.1.S1_at--280--8611Chr07:21789954..21789978 (25 bp)
TGGTGCTGCCAAGAACCCTGAGGTT
LOC_Os07g36420
Os.4895.1.S1_at--823--9851Chr07:21788089..21788110 (22 bp)
TACACAGCTTGGTTTATCCTCCAAT
LOC_Os07g36420
Os.4895.1.S1_at--983--10831Chr07:21788056..21788080 (25 bp)
TTGGTCATGATGATGCCTTCCCTGG
LOC_Os07g36420
Os.4895.1.S1_at--422--5011Chr07:21787920..21788048 (25 bp)
GCAGGCTTCTATCCTCATAGTGGTA
LOC_Os07g36420
Os.4895.1.S1_at--458--731Chr07:21787812..21787928 (25 bp)
ATGTTGGTCCAAACGATCCACGCTT
LOC_Os07g36420
Os.4895.1.S1_at--146--9231Chr07:21787651..21787675 (25 bp)
TCCACCAGGTGGTCGTTATGATCCA
LOC_Os07g36420
Os.4895.1.S1_at--280--8594Chr11:13328321..13328411 (24 bp)
TGGTCCACCAGATGTTCCAGGATTT
NONE
Os.4895.1.S1_at--229--192Chr07:21787603..21787627 (25 bp)
ATTTGAACCTTCTCGCTTTGTGAGG
LOC_Os07g36420
Target Sequence 
TGATCGGTGATGTCCTTGCCATTGATGTCCTGGATCTTGAGTCACAGAATAAAGGCCCTTATAATATCCAGATCAATGTG
AAGGATTTCTTCTCCGAGGAGCAGCCAAAGAACTATGGGAACATGTACAAAAACTTTGCAGGCTTAATTGAGACCATGAA
CTCAAATGCATTGAGCAAATTGGATGAGAAGGATGCTGGTGCTGCCAAGAACCCTGAGGTTGAGACTAGCTCATCAATAC
ACAGCTTGGTTTATCCTCCAATAGCTCCACTTGGTCATGATGATGCCTTCCCTGGCCCTGGCGCAGGCTTCTATCCTCAT
AGTGGTATTGGTGGGGGTGGCAGCATGCATGTTGGTCCAAACGATCCACGCTTCTTTCCTTCTAATCCCTTCCCTGTGCC
CTTTGGTGGCCCTGGGAGTGTTCCACCAGGTGGTCGTTATGATCCAATTGGTCCACCAGATGTTCCAGGATTTGAACCTT
CTCGCTTTGTGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis