Browse Element(s) Details


Os.4904.1.S1_at

Description gb:AK065913.1
DB_XREF= gi:32975931
TID=Os.4904.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044E15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044E15, full insert sequence.
FL= gb:AK065913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3942011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39380Os.6239.1.S1_at8/119+22644422..22648010Monodehydroascorbate reductase, putative, expressed
LOC_Os09g39390Os.6765.1.S1_a_at11/119+22648606..22651602oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os09g39400Os.4702.1.S1_at11/119+22653383..22656565Histidine-containing phosphotransfer protein 1, putative, expressed
LOC_Os09g39410Os.47472.1.S1_at8/119+22660210..22664877Male sterility protein, expressed
LOC_Os09g39420Os.4904.1.S1_at11/119+22665907..22670890transducin family protein, putative, expressed
LOC_Os09g39430Os.10528.1.S1_s_at11/119+22671047..22674921GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g39440Os.15779.1.S1_at11/119+22677079..22679783Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os09g39450OsAffx.18058.1.S1_at9/119+22680901..22681972hypothetical protein
LOC_Os09g39462Os.12034.1.S1_a_at11/119+22682047..22687249expressed protein
LOC_Os09g39462Os.12034.2.S1_at11/119+22682047..22687249expressed protein
LOC_Os09g39474OsAffx.18059.1.S1_at7/119+22687595..22689107expressed protein
LOC_Os09g39490OsAffx.6533.1.S1_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39490OsAffx.6533.1.S1_x_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39500Os.1386.1.S1_a_at11/119+22692186..22694404ubiquitin fusion protein, putative, expressed
LOC_Os09g39510Os.55913.1.S1_at10/119+22694639..22695664Germin-like protein subfamily T member 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0006900biological_processvesicle budding
GO:0009933biological_processmeristem organization
GO:0045814biological_processnegative regulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0005678cellular_componentchromatin assembly complex
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4904.1.S1_at--1116--211Chr09:22670361..22670385 (25 bp)
ATATACTACCTTCCATGGCTACGAA
LOC_Os09g39420
Os.4904.1.S1_at--120--5451Chr09:22670383..22670407 (25 bp)
GAACCGCAAGGTCCAACGGCTGTTA
LOC_Os09g39420
Os.4904.1.S1_at--731--6731Chr09:22670404..22670428 (25 bp)
GTTAAACGAATTCATGGACCTCCTT
LOC_Os09g39420
Os.4904.1.S1_at--17--9251Chr09:22670424..22670448 (25 bp)
TCCTTTCGGAGTACGAGGCTGCTGA
LOC_Os09g39420
Os.4904.1.S1_at--810--2971Chr09:22670525..22670549 (25 bp)
AATGGTGCCTCATAGCAGTTGGGAT
LOC_Os09g39420
Os.4904.1.S1_at--725--4711Chr09:22670551..22670575 (25 bp)
GCTGGAGAATTATTACTGACACCCC
LOC_Os09g39420
Os.4904.1.S1_at--538--7431Chr09:22670624..22670648 (25 bp)
GTGTTTTGAGAATTGCCCATGGTTG
LOC_Os09g39420
Os.4904.1.S1_at--164--1611Chr09:22670662..22670686 (25 bp)
AGCTGCTAGAGCCTTTGTGTTCATC
LOC_Os09g39420
Os.4904.1.S1_at--856--2871Chr09:22670702..22670726 (25 bp)
AAGGGTGAGACCTCAGCCAAACAAC
LOC_Os09g39420
Os.4904.1.S1_at--521--8431Chr09:22670781..22670805 (25 bp)
GGCCTCCTGGTGATCGATTGTGTAA
LOC_Os09g39420
Os.4904.1.S1_at--68--2531Chr09:22670834..22670858 (25 bp)
AACTTAATGTCCTTTTTGCTTATGG
LOC_Os09g39420
Target Sequence 
ATATACTACCTTCCATGGCTACGAACCGCAAGGTCCAACGGCTGTTAAACGAATTCATGGACCTCCTTTCGGAGTACGAG
GCTGCTGAGACAAACGTCGAGCAAATGGACGTGACACCAACACCACCACCACCACCACCAGCAGCAGCAACAGAAGGCAA
CAATAATGGTGCCTCATAGCAGTTGGGATTGCTGGAGAATTATTACTGACACCCCCTTGGGTAAGCATAGGACAATCAAG
TGCATACAACATAGAACTATCATGTGTTTTGAGAATTGCCCATGGTTGATTAAATTTATGTAGCTGCTAGAGCCTTTGTG
TTCATCTTCTTCTTAATAGCAAAGGGTGAGACCTCAGCCAAACAACCCGTTAGTTGTAACGCGAGCAGAGTGTAACAGTA
GAAAGAAAGCGAGCGAGGGAGGCCTCCTGGTGATCGATTGTGTAACAGTAAATCTGTAGAAGGTCAGACGATTAACTTAA
TGTCCTTTTTGCTTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis