Browse Element(s) Details


Os.49085.1.S2_at

Description gb:AK119371.1
DB_XREF= gi:37988994
TID=Os.49085.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49085 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-H10, full insert sequence.
FL= gb:AK064309.1 gb:AK102428.1 gb:AK119371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4089011/11spermidine synthase, putative, expressed
LOC_Os07g274901/11Regulator of chromosome condensation family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40830Os.52026.3.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.10417.1.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.52026.2.S1_at9/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40840OsAffx.17444.1.S1_at11/118+25712545..25715139Exo70 exocyst complex subunit family protein
LOC_Os08g40850Os.14971.1.S1_at11/118+25715842..25720263Mitochondrial carrier protein, expressed
LOC_Os08g40860Os.37268.1.S1_at11/118+25720886..25724289pseudouridine synthase family protein, putative, expressed
LOC_Os08g40870OsAffx.29613.1.S1_at11/118+25724317..25725498pentatricopeptide, putative, expressed
LOC_Os08g40880Os.10684.1.S1_at11/118+25726174..25732019oligouridylate-binding protein, putative, expressed
LOC_Os08g40890Os.49085.1.S2_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40890Os.49085.1.S1_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40900Os.48218.1.S1_at11/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40900Os.48218.1.S2_at9/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40910Os.11112.1.S1_s_at11/118+25755406..25756197expressed protein
LOC_Os08g40920NANA8+25757172..25758170hypothetical protein
LOC_Os08g40930Os.3414.1.A1_at9/118+25760725..25767733isoamylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003682molecular_functionchromatin binding
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49085.1.S2_at--860--251Chr08:25734817..25734841 (25 bp)
ATATGGAACGGACCTGCTTTCCCTT
LOC_Os08g40890
Os.49085.1.S2_at--452--8272Chr07:16031291..16031451 (25 bp)
GGCAGGAGTACATTCTTCTTCTCTG
LOC_Os07g27490
Os.49085.1.S2_at--193--10571Chr08:25734695..25734719 (25 bp)
TTCTTCTCTGGTTATCTGTTGTGTA
LOC_Os08g40890
Os.49085.1.S2_at--278--2051Chr08:25734665..25734689 (25 bp)
ACTTTTGTTCATGTGTGGAGCAGCA
LOC_Os08g40890
Os.49085.1.S2_at--1035--851Chr08:25734596..25734620 (25 bp)
ATGGCTTACTGGTATCTGCTGTGAT
LOC_Os08g40890
Os.49085.1.S2_at--617--2231Chr08:25734527..25734551 (25 bp)
ACAATTGTTTCACCTGTCGATCAGA
LOC_Os08g40890
Os.49085.1.S2_at--869--6311Chr08:25734489..25734513 (25 bp)
GATGCACTGATTGTTAGCGTTTCGT
LOC_Os08g40890
Os.49085.1.S2_at--1130--10591Chr08:25734469..25734493 (25 bp)
TTCGTTGTAAAATAGGCCCCTGGTG
LOC_Os08g40890
Os.49085.1.S2_at--227--7971Chr08:25734391..25734415 (25 bp)
GGATCGCCGTTTTCATGTTGTGAGC
LOC_Os08g40890
Os.49085.1.S2_at--190--6391Chr08:25734320..25734344 (25 bp)
GATCGCCATTTTCGTGTTGGTGCCA
LOC_Os08g40890
Os.49085.1.S2_at--563--7791Chr08:25734302..25734326 (25 bp)
GGTGCCATGTACTTTTCTTGTTAAT
LOC_Os08g40890
Target Sequence 
ATATGGAACGGACCTGCTTTCCCTTCTTTTTAAAAAGACTTTAAGCTTAAGGTGGAAATATGGCGTATCAGCAGCCAAGA
GGAAAACTGGTTGTCCCAAACATACTGGGCAGGAGTACATTCTTCTTCTCTGGTTATCTGTTGTGTAATTTCACTTTTGT
TCATGTGTGGAGCAGCAGCAATTATTGTTTGAGTGTCAACATTTTGTATTGAAAACATAATATGGCTTACTGGTATCTGC
TGTGATGTTATGGAGAAGCATGTGAAGCAAGTAAGCCCAGAATCATGGAAACAATTGTTTCACCTGTCGATCAGAACATC
ATCACCAGGATGCACTGATTGTTAGCGTTTCGTTGTAAAATAGGCCCCTGGTGAGCCATCCAGATGAATTATTTATCTGT
TCATTTAGAGTTTGTAGAGGTATATTGGATCGCCGTTTTCATGTTGTGAGCTATCTAAACCATTGTTTGTTCATTTAAAG
TTTGTAGAGGTATATTCGATCGCCATTTTCGTGTTGGTGCCATGTACTTTTCTTGTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49085.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis