Browse Element(s) Details


Os.49090.1.S1_at

Description gb:AK067708.1
DB_XREF= gi:32977726
TID=Os.49090.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49090 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118H02, full insert sequence.
FL= gb:AK067708.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g574709/11tetratricopeptide repeat, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57420Os.33791.1.S1_at11/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57420OsAffx.2516.1.S1_at1/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57430Os.33749.1.S1_at11/112+35193550..35195052zinc finger protein, putative, expressed
LOC_Os02g57440OsAffx.3094.1.S1_at11/112+35199142..35200416Protein kinase domain containing protein, expressed
LOC_Os02g57450Os.10387.1.S1_a_at10/112+35201744..35205557Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os02g57460Os.47495.1.S1_at11/112+35209394..35211898Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g57470Os.49090.1.S1_at9/112+35212441..35215228tetratricopeptide repeat, putative, expressed
LOC_Os02g57480Os.49640.1.S1_at11/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57480OsAffx.14722.1.S1_x_at5/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57490Os.7342.1.S1_at11/112+35221429..35222740expressed protein
LOC_Os02g57500Os.7461.1.S1_at11/112+35224869..35228093expressed protein
LOC_Os02g57510Os.8459.1.S1_at10/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57510Os.50252.1.S1_x_at1/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57520OsAffx.3095.1.S1_at11/112+35236753..35237943DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49090.1.S1_at--808--4511Chr02:35213522..35213546 (25 bp)
GCCGCACCATTCAGATACCATAGAG
LOC_Os02g57470
Os.49090.1.S1_at--1150--1551Chr02:35212782..35212806 (25 bp)
AGCTATTCGTCTCTATGAGCAGATA
LOC_Os02g57470
Os.49090.1.S1_at--115--9851Chr02:35212753..35212777 (25 bp)
TAAAGGCTCTTTCATGCCTATCGCC
LOC_Os02g57470
Os.49090.1.S1_at--60--3171Chr02:35212716..35212740 (25 bp)
AATTGCATTGCCTGAACCTCTGGAA
LOC_Os02g57470
Os.49090.1.S1_at--320--6571Chr02:35212676..35212700 (25 bp)
GATTCTACCAGAGTTGCTCAACAAT
LOC_Os02g57470
Os.49090.1.S1_at--606--1191Chr02:35212643..35212667 (25 bp)
AGTATTGTACGCATCAGTTTTTCTA
LOC_Os02g57470
Os.49090.1.S1_at--424--10411Chr02:35212577..35212601 (25 bp)
TTTTGGCTGTGAAACTACCTATTGT
LOC_Os02g57470
Os.49090.1.S1_at--318--6371NONE
GATCCTTATTGACTTGGTACGCACT
NONE
Os.49090.1.S1_at--1049--10851NONE
TTGGTACGCACTGACATCCTTTTGT
NONE
Os.49090.1.S1_at--804--5631Chr02:35212525..35212549 (25 bp)
GACATCCTTTTGTGCCACTTAGAAG
LOC_Os02g57470
Os.49090.1.S1_at--970--5531Chr02:35212474..35212498 (25 bp)
GAAACACACCTTTTCAGCATGACAG
LOC_Os02g57470
Target Sequence 
GCCGCACCATTCAGATACCATAGAGGCCTGCCAGAGCCTTGCCAATGCATACAACGCAANGGGAAGNTATGNTNTNNCNA
NNNNNTTCCANNNNNNNNNNGTGGATTCTTGGCGAANCCATGGTCCCAGTGCTAGGGACGAGCTCAAGGAAGCTATTCGT
CTCTATGAGCAGATAAAGATAAAGGCTCTTTCATGCCTATCGCCTGAAAATTCAGCAATTGCATTGCCTGAACCTCTGGA
AAAGGAGGTTGATTCTGATTCTACCAGAGTTGCTCAACAATAATTTCAAAGTATTGTACGCATCAGTTTTTCTATCAATA
TATGATTATGATATGTTGTTTAGTAGNACAAGAAATTTTGGCTGTGAAACTACCTATTGTATGATCCTTATTGACTTGGT
ACGCACTGACATCCTTTTGTGCCACTTAGAAGACCTAACAGTATATCAAAAAGTAATCAGAAACACACCTTTTCAGCATG
ACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis