Browse Element(s) Details


Os.49093.1.S1_a_at

Description gb:AB008519.1
DB_XREF= gi:3641660
GEN=Nrt2
TID=Os.49093.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49093 (NCBI UniGene Cluster)
DEF=Oryza sativa Nrt2 mRNA for high affinity nitrate transporter, complete cds.
PROD=high affinity nitrate transporter
FL= gb:AB008519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0219011/11High affinity nitrate transporter, putative, expressed
LOC_Os02g0217011/11High affinity nitrate transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02150Os.49918.1.S1_at11/112+646112..649305DEAD/DEAH box helicase family protein, expressed
LOC_Os02g02160OsAffx.24060.1.S1_at11/112+650534..651349expressed protein
LOC_Os02g02170Os.49093.1.S1_a_at11/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02170Os.49093.1.S1_at10/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02170Os.49093.2.S1_x_at8/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02180NANA2+659690..660670hypothetical protein
LOC_Os02g02190Os.49093.1.S1_a_at11/112+667264..669053High affinity nitrate transporter, putative, expressed
LOC_Os02g02190Os.49093.2.S1_x_at11/112+667264..669053High affinity nitrate transporter, putative, expressed
LOC_Os02g02200OsAffx.28270.5.S1_x_at11/112+676466..677742pathogenesis-related thaumatin family protein, putative
LOC_Os02g02200OsAffx.28270.5.S1_at11/112+676466..677742pathogenesis-related thaumatin family protein, putative
LOC_Os02g02210Os.2821.1.A1_s_at11/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210Os.2821.1.A1_at11/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.21870.2.S1_x_at8/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.21870.3.S1_x_at7/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210Os.38172.1.S1_x_at2/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.29532.2.S1_x_at1/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.29532.2.S1_at1/112+679452..697350aminotransferase, class III family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015706biological_processnitrate transport
GO:0048527biological_processlateral root development
GO:0016020cellular_componentmembrane
GO:0015112molecular_functionnitrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49093.1.S1_a_at--241--8612Chr02:656789..656813 (25 bp)
TGGTGCTCGTCCATTTCCCGCAGTG
LOC_Os02g02170
Os.49093.1.S1_a_at--928--7312Chr02:656791..656815 (25 bp)
GTGCTCGTCCATTTCCCGCAGTGGG
LOC_Os02g02170
Os.49093.1.S1_a_at--533--972Chr02:656852..656876 (25 bp)
AGGAGCACTACTACGGCTCCGAGTG
LOC_Os02g02170
Os.49093.1.S1_a_at--618--5092Chr02:656856..656880 (25 bp)
GCACTACTACGGCTCCGAGTGGAGC
LOC_Os02g02170
Os.49093.1.S1_a_at--747--2012Chr02:656861..656885 (25 bp)
ACTACGGCTCCGAGTGGAGCGAACA
LOC_Os02g02170
Os.49093.1.S1_a_at--318--7552Chr02:656898..656922 (25 bp)
GGGCCTCCACGGTGCAAGTCTCAAG
LOC_Os02g02170
Os.49093.1.S1_a_at--705--4452Chr02:656900..656924 (25 bp)
GCCTCCACGGTGCAAGTCTCAAGTT
LOC_Os02g02170
Os.49093.1.S1_a_at--924--9212Chr02:656903..656927 (25 bp)
TCCACGGTGCAAGTCTCAAGTTCGC
LOC_Os02g02170
Os.49093.1.S1_a_at--916--4352Chr02:656904..656928 (25 bp)
CCACGGTGCAAGTCTCAAGTTCGCC
LOC_Os02g02170
Os.49093.1.S1_a_at--204--7052Chr02:656915..656939 (25 bp)
GTCTCAAGTTCGCCGAGAACTCCCG
LOC_Os02g02170
Os.49093.1.S1_a_at--627--1432Chr02:656930..656954 (25 bp)
AGAACTCCCGCTCCGAGCGTGGCCG
LOC_Os02g02170
Target Sequence 
TGGTGCTCGTCCATTTCCCGCAGTGGGGCTCCATGTTCCTCCCGCCCAACGCCGGCGCCGAGGAGGAGCACTACTACGGC
TCCGAGTGGAGCGAACAGGAGAAGAGCAAGGGCCTCCACGGTGCAAGTCTCAAGTTCGCCGAGAACTCCCGCTCCGAGCG
TGGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49093.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis