Browse Element(s) Details


Os.49108.2.S1_x_at

Description gb:AK070195.1
DB_XREF= gi:32980219
TID=Os.49108.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013165F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043E04, full insert sequence.
FL= gb:AK070195.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3254010/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32520OsAffx.3979.1.S1_at11/114+19389594..19391879hypothetical protein
LOC_Os04g32530OsAffx.3980.1.S1_at8/114+19395529..19397795hypothetical protein
LOC_Os04g32540Os.49108.2.S1_x_at10/114+19404504..19408114Serine carboxypeptidase family protein, expressed
LOC_Os04g32550Os.4650.1.S1_at10/114+19410796..19413447Defender against cell death 1, putative, expressed
LOC_Os04g32560Os.37370.1.S1_at11/114+19413897..19420445ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os04g32570OsAffx.26564.1.S1_at11/114+19420993..19421784hypothetical protein
LOC_Os04g32580OsAffx.26288.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580Os.20057.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580OsAffx.24671.1.S1_s_at1/114+19423109..19425313expressed protein
LOC_Os04g32590Os.5371.1.S1_s_at11/114+19425396..19428386expressed protein
LOC_Os04g32590OsAffx.14098.1.S1_at11/114+19425396..19428386expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49108.2.S1_x_at--421--8751Chr04:19407267..19407291 (25 bp)
TGTACAGCGGCGACCAGGACTCGGT
LOC_Os04g32540
Os.49108.2.S1_x_at--13--7251Chr04:19407555..19407579 (25 bp)
GTCCCGAACGACGATGATCACGTCT
LOC_Os04g32540
Os.49108.2.S1_x_at--73--6451Chr04:19407570..19407594 (25 bp)
GATCACGTCTCATGTCAAGCGCGGA
LOC_Os04g32540
Os.49108.2.S1_x_at--971--9711Chr04:19407584..19407608 (25 bp)
TCAAGCGCGGAGGTGCATTGTTGTT
LOC_Os04g32540
Os.49108.2.S1_x_at--670--10691Chr04:19407607..19407631 (25 bp)
TTGCGTTGCAAATGCGTACGAGCGA
LOC_Os04g32540
Os.49108.2.S1_x_at--593--6991Chr04:19407622..19407646 (25 bp)
GTACGAGCGATTTCGTGTGCGCCAC
LOC_Os04g32540
Os.49108.2.S1_x_at--937--7291Chr04:19407638..19407662 (25 bp)
GTGCGCCACCGCTATATATAGTACT
LOC_Os04g32540
Os.49108.2.S1_x_at--682--10171Chr04:19407654..19407678 (25 bp)
TATAGTACTCCGTATTGTTGCTGGG
LOC_Os04g32540
Os.49108.2.S1_x_at--500--6672Chr04:19407670..19407694 (25 bp)
GTTGCTGGGAATCGAATTGTTTCTC
LOC_Os04g32540
Os.49108.2.S1_x_at--84--5351Chr04:19407734..19407758 (25 bp)
GAAGATGACTCCATGCCGGGTTTAC
LOC_Os04g32540
Os.49108.2.S1_x_at--1160--10771NONE
TTGTTACGGAGAGTACTCCCTCCAT
NONE
Target Sequence 
TGTACAGCGGCGACCAGGACTCGGTGATCCCGCTGACGGGGAGCAGGACGGTGGTGCAGCGGCTGGCGGGGTGGCTGCGG
CTGGGGACGACGGCGGCGGGGTACAGGGTGTGGTTCGAAGGGCGGCAGGTGGGCGGGTGGACGCAGTCGTTCGGCGGCGG
CGCGCTGTCGTTCGCCACGGTGAGGGGGGCGTCGCACGAGGCCCCCTTCTCCCAGCCCGAGCGCTCGCTCGTCCTCTTCG
CCGCCTTCCTCGCCGGCCGCCCCCTTCCCGACTCCTTCCAGTGACGTCGTCCCGAACGACGATGATCACGTCTCATGTCA
AGCGCGGAGGTGCATTGTTGTTGCGTTGCAAATGCGTACGAGCGATTTCGTGTGCGCCACCGCTATATATAGTACTCCGT
ATTGTTGCTGGGAATCGAATTGTTTCTCGGAGAAAATCTCATCTGGAAAATGCTGATGTGGGGTGGGGAAGATGACTCCA
TGCCGGGTTTACCTTGCTCTTTAGTTCAAAATAGAAGTAACTAACGTTTGTTACGGAGAGTACTCCCTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49108.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis