Browse Element(s) Details


Os.49161.1.S1_at

Description gb:AK064349.1
DB_XREF= gi:32974367
TID=Os.49161.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49161 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A03, full insert sequence.
FL= gb:AK064349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1551011/11Cellulase containing protein, expressed
LOC_Os07g323801/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15470NANA5+8718684..8725404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15480OsAffx.4347.1.S1_at11/115+8734339..8735391hypothetical protein
LOC_Os05g15490OsAffx.828.1.S1_x_at1/115+8740964..8741620retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15510Os.49161.1.S1_s_at11/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.49161.1.S1_at11/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.6163.1.S1_at9/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.4986.1.S1_at1/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15520Os.8751.1.S1_at11/115+8757256..8761842DNA-binding protein, putative, expressed
LOC_Os05g15530Os.4892.1.S1_at11/115+8764785..8766893aminotransferase, class IV family protein, expressed
LOC_Os05g15540Os.47463.1.S1_x_at3/115+8769524..8774741transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15540Os.14491.2.S1_x_at3/115+8769524..8774741transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15550OsAffx.20673.1.S1_x_at1/115+8777937..8784218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15550OsAffx.13677.1.S1_x_at1/115+8777937..8784218retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49161.1.S1_at--566--3751Chr05:8749266..8749439 (25 bp)
CTCTCACCTTTGTGGGAGAATGGGT
LOC_Os05g15510
Os.49161.1.S1_at--194--6991Chr05:8749228..8749252 (25 bp)
GTACCCAATGCAACAAAGGAAGAGT
LOC_Os05g15510
Os.49161.1.S1_at--56--3611Chr05:8749041..8749065 (25 bp)
CATTGTTACGAGGTACTGGCTCCGT
LOC_Os05g15510
Os.49161.1.S1_at--337--4052Chr07:19242673..19242751 (24 bp)
CGAGGTACTGGCTCCGTCCCAAAAT
LOC_Os07g32380
Os.49161.1.S1_at--7--3111Chr05:8748998..8749022 (25 bp)
AATAGACATAGATTAGACTTTTTCT
LOC_Os05g15510
Os.49161.1.S1_at--383--8571Chr05:8748960..8748984 (25 bp)
TGGATAGAAAGTATGCCCAGATTTA
LOC_Os05g15510
Os.49161.1.S1_at--125--5571Chr05:8748954..8748978 (25 bp)
GAAAGTATGCCCAGATTTATTATAA
LOC_Os05g15510
Os.49161.1.S1_at--1101--471Chr05:8748921..8748945 (25 bp)
ATCTGGGTTGTTATATTCTCGAATG
LOC_Os05g15510
Os.49161.1.S1_at--465--10211Chr05:8748908..8748932 (25 bp)
TATTCTCGAATGGAGTAGCCAAATT
LOC_Os05g15510
Os.49161.1.S1_at--145--831Chr05:8748899..8748923 (25 bp)
ATGGAGTAGCCAAATTTTTTGAGAC
LOC_Os05g15510
Os.49161.1.S1_at--280--5991Chr05:8748879..8748903 (25 bp)
GAGACGAATAAATTGGGCCACATAG
LOC_Os05g15510
Target Sequence 
CTCTCACCTTTGTGGGAGAATGGGTGGCTGAGTGGAGAGTACCCAATGCAACAAAGGAAGAGTACCAGAGATATGCAAAG
GTGCAGATGGATGTTTATGGGCAGGCCACCTTTGGATGGTCCTATTGGACTCTCAAGAATGTTAACAACCACTGGAATCT
AGAGTGGATGATCAACAATGGCTACATCTCCTTGAAAACCTAACAACTGACATGCCTCTAGCTGCCATTGTTACGAGGTA
CTGGCTCCGTCCCAAAATATAACAATCTAATAGACATAGATTAGACTTTTTCTATTAATAAAAATCTGGATAGAAAGTAT
GCCCAGATTTATTATAATATAATATATCTGGGTTGTTATATTCTCGAATGGAGTAGCCAAATTTTTTGAGACGAATAAAT
TGGGCCACATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49161.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis